FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2496, 655 aa
  1>>>pF1KE2496 655 - 655 aa - 655 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8511+/-0.000921; mu= 9.1049+/- 0.055
 mean_var=178.7728+/-36.824, 0's: 0 Z-trim(111.3): 33  B-trim: 101 in 1/52
 Lambda= 0.095923
 statistics sampled from 12231 (12241) to 12231 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.376), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(32554)
CCDS10867.1 SMPD3 gene_id:55512|Hs108|chr16        ( 655) 4504 635.9 5.1e-182


>>CCDS10867.1 SMPD3 gene_id:55512|Hs108|chr16             (655 aa)
 initn: 4504 init1: 4504 opt: 4504  Z-score: 3381.3  bits: 635.9 E(32554): 5.1e-182
Smith-Waterman score: 4504; 100.0% identity (100.0% similar) in 655 aa overlap (1-655:1-655)

               10        20        30        40        50        60
pF1KE2 MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYEKRQRADDPCCLQLLCT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLEDKGLAGGAALLSEWKGTGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDSPTNTSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDSPTNTSIS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 AASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGRHPGDEAANGPASGDPVDSSSPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPRGQTPNHNQQDGDSGSLGSPSASRE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 SLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SLVKGRAGPDTSASGEPGANSKLLYKASVVKKAAARRRRHPDEAFDHEVSAFFPANLDFL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 CLQEVFDKRAATKLKEQLHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CLQEVFDKRAATKLKEQLHGYFEYILYDVGVYGCQGCCSFKCLNSGLLFASRYPIMDVAY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 HCYPNKCNDDALASKGALFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HCYPNKCNDDALASKGALFLKVQVGSTPQDQRIVGYIACTHLHAPQEDSAIRCGQLDLLQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 DWLADFRKSTSSSSAANPEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DWLADFRKSTSSSSAANPEELVAFDVVCGDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 GEEKPWAIGTLLDTNGLYDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GEEKPWAIGTLLDTNGLYDEDVCTPDNLQKVLESEEGRREYLAFPTSKSSGQKGRKELLK
              550       560       570       580       590       600

              610       620       630       640       650     
pF1KE2 GNGRRIDYMLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVSSGEEEA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GNGRRIDYMLHAEEGLCPDWKAEVEEFSFITQLSGLTDHLPVAMRLMVSSGEEEA
              610       620       630       640       650     




655 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:04:28 2016 done: Mon Nov  7 21:04:29 2016
 Total Scan time:  3.340 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]