FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2494, 390 aa
  1>>>pF1KE2494 390 - 390 aa - 390 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2191+/-0.000897; mu= 12.4964+/- 0.054
 mean_var=84.5458+/-16.781, 0's: 0 Z-trim(107.4): 20  B-trim: 0 in 0/51
 Lambda= 0.139485
 statistics sampled from 9523 (9534) to 9523 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.293), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS1198.2 CASQ1 gene_id:844|Hs108|chr1            ( 396) 2577 528.4 4.3e-150
CCDS884.1 CASQ2 gene_id:845|Hs108|chr1             ( 399) 1797 371.5 7.7e-103


>>CCDS1198.2 CASQ1 gene_id:844|Hs108|chr1                 (396 aa)
 initn: 2577 init1: 2577 opt: 2577  Z-score: 2808.2  bits: 528.4 E(32554): 4.3e-150
Smith-Waterman score: 2577; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:7-396)

                     10        20        30        40        50    
pF1KE2       MGPRAVPGLRLALLLLLVLGTPKSGVQGQEGLDFPEYDGVDRVINVNAKNYKNV
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSATDRMGPRAVPGLRLALLLLLVLGTPKSGVQGQEGLDFPEYDGVDRVINVNAKNYKNV
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE2 FKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKK
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KE2 LGLTEVDSMYVFKGDEVIEYDGEFSADTIVEFLLDVLEDPVELIEGERELQAFENIEDEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGLTEVDSMYVFKGDEVIEYDGEFSADTIVEFLLDVLEDPVELIEGERELQAFENIEDEI
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KE2 KLIGYFKSKDSEHYKAFEDAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KLIGYFKSKDSEHYKAFEDAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPV
              190       200       210       220       230       240

          240       250       260       270       280       290    
pF1KE2 TIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGFEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGFEFL
              250       260       270       280       290       300

          300       310       320       330       340       350    
pF1KE2 ETLKAVAQDNTENPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ETLKAVAQDNTENPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWME
              310       320       330       340       350       360

          360       370       380       390
pF1KE2 MDDEEDLPSAEELEDWLEDVLEGEINTEDDDDDDDD
       ::::::::::::::::::::::::::::::::::::
CCDS11 MDDEEDLPSAEELEDWLEDVLEGEINTEDDDDDDDD
              370       380       390      

>>CCDS884.1 CASQ2 gene_id:845|Hs108|chr1                  (399 aa)
 initn: 1797 init1: 1797 opt: 1797  Z-score: 1959.8  bits: 371.5 E(32554): 7.7e-103
Smith-Waterman score: 1797; 68.4% identity (91.3% similar) in 367 aa overlap (24-390:15-381)

               10        20        30        40        50        60
pF1KE2 MGPRAVPGLRLALLLLLVLGTPKSGVQGQEGLDFPEYDGVDRVINVNAKNYKNVFKKYEV
                              :. ...:::.:: ::: :::.... ::.:.:.:::..
CCDS88          MKRTHLFIVGIYFLSSCRAEEGLNFPTYDGKDRVVSLSEKNFKQVLKKYDL
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KE2 LALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEV
       : : ::::  .::..:.::...:..:::.::::: :..:: .::..:.: .:::::. : 
CCDS88 LCLYYHEPVSSDKVTQKQFQLKEIVLELVAQVLEHKAIGFVMVDAKKEAKLAKKLGFDEE
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KE2 DSMYVFKGDEVIEYDGEFSADTIVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYF
        :.:..:::..::.::::.::..::::::..:::::.: .. :.:::: ::: :::::.:
CCDS88 GSLYILKGDRTIEFDGEFAADVLVEFLLDLIEDPVEIISSKLEVQAFERIEDYIKLIGFF
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KE2 KSKDSEHYKAFEDAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKP
       ::.:::.:::::.:::.:.::: ::::::. :::::.::.::.:::: ::.::..::.::
CCDS88 KSEDSEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPNKP
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KE2 NSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGFEFLETLKAV
        .:::.:.::.::.: :::.:.:: :.::::::..:::::::::..::::.:::: :: :
CCDS88 YTEEELVEFVKEHQRPTLRRLRPEEMFETWEDDLNGIHIVAFAEKSDPDGYEFLEILKQV
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KE2 AQDNTENPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEED
       :.:::.::::::.::::::::::: :::::: :::  :::::::::::::::::. :..:
CCDS88 ARDNTDNPDLSILWIDPDDFPLLVAYWEKTFKIDLFRPQIGVVNVTDADSVWMEIPDDDD
             300       310       320       330       340       350 

              370       380       390                  
pF1KE2 LPSAEELEDWLEDVLEGEINTEDDDDDDDD                  
       ::.:::::::.:::: :.:::::::.::::                  
CCDS88 LPTAEELEDWIEDVLSGKINTEDDDEDDDDDDNSDEEDNDDSDDDDDE
             360       370       380       390         




390 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:57:09 2016 done: Mon Nov  7 20:57:09 2016
 Total Scan time:  2.010 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]