FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2488, 360 aa
  1>>>pF1KE2488 360 - 360 aa - 360 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.3002+/-0.000414; mu= -28.4209+/- 0.026
 mean_var=599.0697+/-121.130, 0's: 0 Z-trim(126.7): 2  B-trim: 0 in 0/58
 Lambda= 0.052401
 statistics sampled from 53396 (53399) to 53396 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.858), E-opt: 0.2 (0.626), width:  16
 Scan time:  9.160

The best scores are:                                      opt bits E(85289)
NP_077003 (OMIM: 611293) coiled-coil domain-contai ( 360) 2454 199.3 1.1e-50


>>NP_077003 (OMIM: 611293) coiled-coil domain-containing  (360 aa)
 initn: 2454 init1: 2454 opt: 2454  Z-score: 1031.1  bits: 199.3 E(85289): 1.1e-50
Smith-Waterman score: 2454; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)

               10        20        30        40        50        60
pF1KE2 MDTPLRRSRRLGGLRPESPESLTSVSRTRRALVEFESNPEETREPGSPPSVQRAGLGSPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MDTPLRRSRRLGGLRPESPESLTSVSRTRRALVEFESNPEETREPGSPPSVQRAGLGSPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RPPKTSPGSPRLQQGAGLESPQGQPEPGAASPQRQQDLHLESPQRQPEYSPESPRCQPKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 RPPKTSPGSPRLQQGAGLESPQGQPEPGAASPQRQQDLHLESPQRQPEYSPESPRCQPKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SEEAPKCSQDQGVLASELAQNKEELTPGAPQHQLPPVPGSPEPYPGQQAPGPEPSQPLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 SEEAPKCSQDQGVLASELAQNKEELTPGAPQHQLPPVPGSPEPYPGQQAPGPEPSQPLLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LTPRAPGSPRGQHEPSKPPPAGETVTGGFGAKKRKGSSSQAPASKKLNKEELPVIPKGKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 LTPRAPGSPRGQHEPSKPPPAGETVTGGFGAKKRKGSSSQAPASKKLNKEELPVIPKGKP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 KSGRVWKDRSKKRFSQMLQDKPLRTSWQRKMKERQERKLAKDFARHLEEEKERRRQEKKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 KSGRVWKDRSKKRFSQMLQDKPLRTSWQRKMKERQERKLAKDFARHLEEEKERRRQEKKQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 RRAENLKRRLENERKAEVVQVIRNPAKLKRAKKKQLRSIEKRDTLALLQKQPPQQPAAKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 RRAENLKRRLENERKAEVVQVIRNPAKLKRAKKKQLRSIEKRDTLALLQKQPPQQPAAKI
              310       320       330       340       350       360




360 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:51:02 2016 done: Mon Nov  7 20:51:03 2016
 Total Scan time:  9.160 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]