Result of FASTA (omim) for
pF1KE2487
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2487, 684 aa
1>>>pF1KE2487 684 - 684 aa - 684 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7051+/-0.00035; mu= 18.0636+/- 0.022
mean_var=81.1505+/-16.172, 0's: 0 Z-trim(114.4): 16 B-trim: 0 in 0/56
Lambda= 0.142373
statistics sampled from 24265 (24280) to 24265 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.285), width: 16
Scan time: 8.620
The best scores are: opt bits E(85289)
NP_068602 (OMIM: 271245,606075,607459,609286,61613 ( 684) 4618 958.7 0
NP_001157284 (OMIM: 271245,606075,607459,609286,61 ( 582) 3925 816.3 0
XP_016871926 (OMIM: 271245,606075,607459,609286,61 ( 230) 1542 326.6 6.7e-89
NP_001157285 (OMIM: 271245,606075,607459,609286,61 ( 230) 1542 326.6 6.7e-89
XP_011538277 (OMIM: 271245,606075,607459,609286,61 ( 230) 1542 326.6 6.7e-89
NP_001157286 (OMIM: 271245,606075,607459,609286,61 ( 128) 849 184.1 2.9e-46
>>NP_068602 (OMIM: 271245,606075,607459,609286,616138) t (684 aa)
initn: 4618 init1: 4618 opt: 4618 Z-score: 5124.8 bits: 958.7 E(85289): 0
Smith-Waterman score: 4618; 100.0% identity (100.0% similar) in 684 aa overlap (1-684:1-684)
10 20 30 40 50 60
pF1KE2 MWVLLRSGYPLRILLPLRGEWMGRRGLPRNLAPGPPRRRYRKETLQALDMPVLPVTATEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MWVLLRSGYPLRILLPLRGEWMGRRGLPRNLAPGPPRRRYRKETLQALDMPVLPVTATEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RQYLRGHGIPFQDGHSCLRALSPFAESSQLKGQTGVTTSFSLFIDKTTGHFLCMTSLAEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 RQYLRGHGIPFQDGHSCLRALSPFAESSQLKGQTGVTTSFSLFIDKTTGHFLCMTSLAEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SWEDFQASVEGRGDGAREGFLLSKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 SWEDFQASVEGRGDGAREGFLLSKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GLTKVTDDTLKRFSVRYLRPARSLVFPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 GLTKVTDDTLKRFSVRYLRPARSLVFPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPRGTTCLPPALLPYLEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 PSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPRGTTCLPPALLPYLEQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 FRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVRPGDQQPRPLEALNGGFNLSRILRTAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 FRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVRPGDQQPRPLEALNGGFNLSRILRTAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 PAWHKSIVSFRQLREEVLGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 PAWHKSIVSFRQLREEVLGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 KTTFISEYALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 KTTFISEYALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFED
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 LPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 LPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 VFRKFATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 VFRKFATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 RYLQVSKNRFDGDVGVFPLEFNKNSLTFSIPPKNKARLKKIKDDTGPVAKKPSSGKKGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 RYLQVSKNRFDGDVGVFPLEFNKNSLTFSIPPKNKARLKKIKDDTGPVAKKPSSGKKGAT
610 620 630 640 650 660
670 680
pF1KE2 TQNSEICSGQAPTPDQPDTSKRSK
::::::::::::::::::::::::
NP_068 TQNSEICSGQAPTPDQPDTSKRSK
670 680
>>NP_001157284 (OMIM: 271245,606075,607459,609286,616138 (582 aa)
initn: 3925 init1: 3925 opt: 3925 Z-score: 4356.5 bits: 816.3 E(85289): 0
Smith-Waterman score: 3925; 99.8% identity (100.0% similar) in 580 aa overlap (1-580:1-580)
10 20 30 40 50 60
pF1KE2 MWVLLRSGYPLRILLPLRGEWMGRRGLPRNLAPGPPRRRYRKETLQALDMPVLPVTATEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWVLLRSGYPLRILLPLRGEWMGRRGLPRNLAPGPPRRRYRKETLQALDMPVLPVTATEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RQYLRGHGIPFQDGHSCLRALSPFAESSQLKGQTGVTTSFSLFIDKTTGHFLCMTSLAEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQYLRGHGIPFQDGHSCLRALSPFAESSQLKGQTGVTTSFSLFIDKTTGHFLCMTSLAEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SWEDFQASVEGRGDGAREGFLLSKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SWEDFQASVEGRGDGAREGFLLSKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GLTKVTDDTLKRFSVRYLRPARSLVFPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLTKVTDDTLKRFSVRYLRPARSLVFPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPRGTTCLPPALLPYLEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPRGTTCLPPALLPYLEQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 FRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVRPGDQQPRPLEALNGGFNLSRILRTAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVRPGDQQPRPLEALNGGFNLSRILRTAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 PAWHKSIVSFRQLREEVLGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAWHKSIVSFRQLREEVLGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 KTTFISEYALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTTFISEYALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFED
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 LPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 VFRKFATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGK
::::::::::::::::::::::::::::::::::::::.:
NP_001 VFRKFATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKVSGL
550 560 570 580
610 620 630 640 650 660
pF1KE2 RYLQVSKNRFDGDVGVFPLEFNKNSLTFSIPPKNKARLKKIKDDTGPVAKKPSSGKKGAT
>>XP_016871926 (OMIM: 271245,606075,607459,609286,616138 (230 aa)
initn: 1542 init1: 1542 opt: 1542 Z-score: 1717.0 bits: 326.6 E(85289): 6.7e-89
Smith-Waterman score: 1542; 100.0% identity (100.0% similar) in 230 aa overlap (455-684:1-230)
430 440 450 460 470 480
pF1KE2 ISEYALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFEDLPLY
::::::::::::::::::::::::::::::
XP_016 MLTQFAEGRLEDQLDKYDHWADRFEDLPLY
10 20 30
490 500 510 520 530 540
pF1KE2 FMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRK
40 50 60 70 80 90
550 560 570 580 590 600
pF1KE2 FATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQ
100 110 120 130 140 150
610 620 630 640 650 660
pF1KE2 VSKNRFDGDVGVFPLEFNKNSLTFSIPPKNKARLKKIKDDTGPVAKKPSSGKKGATTQNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSKNRFDGDVGVFPLEFNKNSLTFSIPPKNKARLKKIKDDTGPVAKKPSSGKKGATTQNS
160 170 180 190 200 210
670 680
pF1KE2 EICSGQAPTPDQPDTSKRSK
::::::::::::::::::::
XP_016 EICSGQAPTPDQPDTSKRSK
220 230
>>NP_001157285 (OMIM: 271245,606075,607459,609286,616138 (230 aa)
initn: 1542 init1: 1542 opt: 1542 Z-score: 1717.0 bits: 326.6 E(85289): 6.7e-89
Smith-Waterman score: 1542; 100.0% identity (100.0% similar) in 230 aa overlap (455-684:1-230)
430 440 450 460 470 480
pF1KE2 ISEYALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFEDLPLY
::::::::::::::::::::::::::::::
NP_001 MLTQFAEGRLEDQLDKYDHWADRFEDLPLY
10 20 30
490 500 510 520 530 540
pF1KE2 FMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRK
40 50 60 70 80 90
550 560 570 580 590 600
pF1KE2 FATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQ
100 110 120 130 140 150
610 620 630 640 650 660
pF1KE2 VSKNRFDGDVGVFPLEFNKNSLTFSIPPKNKARLKKIKDDTGPVAKKPSSGKKGATTQNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSKNRFDGDVGVFPLEFNKNSLTFSIPPKNKARLKKIKDDTGPVAKKPSSGKKGATTQNS
160 170 180 190 200 210
670 680
pF1KE2 EICSGQAPTPDQPDTSKRSK
::::::::::::::::::::
NP_001 EICSGQAPTPDQPDTSKRSK
220 230
>>XP_011538277 (OMIM: 271245,606075,607459,609286,616138 (230 aa)
initn: 1542 init1: 1542 opt: 1542 Z-score: 1717.0 bits: 326.6 E(85289): 6.7e-89
Smith-Waterman score: 1542; 100.0% identity (100.0% similar) in 230 aa overlap (455-684:1-230)
430 440 450 460 470 480
pF1KE2 ISEYALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFEDLPLY
::::::::::::::::::::::::::::::
XP_011 MLTQFAEGRLEDQLDKYDHWADRFEDLPLY
10 20 30
490 500 510 520 530 540
pF1KE2 FMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRK
40 50 60 70 80 90
550 560 570 580 590 600
pF1KE2 FATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQ
100 110 120 130 140 150
610 620 630 640 650 660
pF1KE2 VSKNRFDGDVGVFPLEFNKNSLTFSIPPKNKARLKKIKDDTGPVAKKPSSGKKGATTQNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSKNRFDGDVGVFPLEFNKNSLTFSIPPKNKARLKKIKDDTGPVAKKPSSGKKGATTQNS
160 170 180 190 200 210
670 680
pF1KE2 EICSGQAPTPDQPDTSKRSK
::::::::::::::::::::
XP_011 EICSGQAPTPDQPDTSKRSK
220 230
>>NP_001157286 (OMIM: 271245,606075,607459,609286,616138 (128 aa)
initn: 874 init1: 849 opt: 849 Z-score: 951.5 bits: 184.1 E(85289): 2.9e-46
Smith-Waterman score: 849; 99.2% identity (100.0% similar) in 126 aa overlap (455-580:1-126)
430 440 450 460 470 480
pF1KE2 ISEYALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFEDLPLY
::::::::::::::::::::::::::::::
NP_001 MLTQFAEGRLEDQLDKYDHWADRFEDLPLY
10 20 30
490 500 510 520 530 540
pF1KE2 FMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRK
40 50 60 70 80 90
550 560 570 580 590 600
pF1KE2 FATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQ
::::::::::::::::::::::::::::::::::.:
NP_001 FATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKVSGL
100 110 120
610 620 630 640 650 660
pF1KE2 VSKNRFDGDVGVFPLEFNKNSLTFSIPPKNKARLKKIKDDTGPVAKKPSSGKKGATTQNS
684 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 20:50:24 2016 done: Mon Nov 7 20:50:26 2016
Total Scan time: 8.620 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]