FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2463, 213 aa
  1>>>pF1KE2463 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7662+/-0.000875; mu= 11.0210+/- 0.053
 mean_var=64.5517+/-12.624, 0's: 0 Z-trim(105.8): 25  B-trim: 65 in 1/50
 Lambda= 0.159632
 statistics sampled from 8603 (8609) to 8603 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.264), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS13634.1 ATP5O gene_id:539|Hs108|chr21          ( 213) 1310 310.3 5.9e-85


>>CCDS13634.1 ATP5O gene_id:539|Hs108|chr21               (213 aa)
 initn: 1310 init1: 1310 opt: 1310  Z-score: 1638.7  bits: 310.3 E(32554): 5.9e-85
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE2 MAAPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAAPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 TQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPS
              130       140       150       160       170       180

              190       200       210   
pF1KE2 ILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV
       :::::::::::::::::::::::::::::::::
CCDS13 ILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV
              190       200       210   




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:18:16 2016 done: Mon Nov  7 20:18:17 2016
 Total Scan time:  1.480 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]