FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2462, 118 aa
  1>>>pF1KE2462 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9607+/-0.000328; mu= -1.5912+/- 0.020
 mean_var=145.0846+/-29.057, 0's: 0 Z-trim(119.4): 4  B-trim: 0 in 0/52
 Lambda= 0.106479
 statistics sampled from 33385 (33389) to 33385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.391), width:  16
 Scan time:  4.950

The best scores are:                                      opt bits E(85289)
NP_004879 (OMIM: 607296) V-type proton ATPase subu ( 118)  745 124.8 3.2e-29
NP_569730 (OMIM: 606853) V-type proton ATPase subu ( 118)  497 86.7 9.4e-18
NP_612139 (OMIM: 606853) V-type proton ATPase subu (  77)  267 51.3 2.8e-07
NP_001191007 (OMIM: 606853) V-type proton ATPase s (  78)  216 43.5 6.5e-05


>>NP_004879 (OMIM: 607296) V-type proton ATPase subunit   (118 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 645.6  bits: 124.8 E(85289): 3.2e-29
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE2 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE2 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING
               70        80        90       100       110        

>>NP_569730 (OMIM: 606853) V-type proton ATPase subunit   (118 aa)
 initn: 546 init1: 497 opt: 497  Z-score: 439.7  bits: 86.7 E(85289): 9.4e-18
Smith-Waterman score: 497; 64.1% identity (89.7% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KE2 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA
       ::::::::::::::::::::::..::::: ::::::::::: :.:::: .::.::..:. 
NP_569 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE2 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING
       ::.::.:. :.:::. :....  .:.  ..::..:: .::..:::.::..: ::::. 
NP_569 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA
               70        80        90       100       110        

>>NP_612139 (OMIM: 606853) V-type proton ATPase subunit   (77 aa)
 initn: 285 init1: 257 opt: 267  Z-score: 251.6  bits: 51.3 E(85289): 2.8e-07
Smith-Waterman score: 267; 49.3% identity (86.7% similar) in 75 aa overlap (43-117:2-76)

             20        30        40        50        60        70  
pF1KE2 QAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSRGSCSTE
                                     :.:::: .::.::..:. ::.::.:. :.:
NP_612                              MEVEQYRREREHEFQSKQQAAMGSQGNLSAE
                                            10        20        30 

             80        90       100       110        
pF1KE2 VEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING
       ::. :....  .:.  ..::..:: .::..:::.::..: ::::. 
NP_612 VEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA
              40        50        60        70       

>>NP_001191007 (OMIM: 606853) V-type proton ATPase subun  (78 aa)
 initn: 311 init1: 201 opt: 216  Z-score: 209.2  bits: 43.5 E(85289): 6.5e-05
Smith-Waterman score: 247; 43.6% identity (59.8% similar) in 117 aa overlap (1-117:1-77)

               10        20        30        40        50        60
pF1KE2 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA
       ::::::::::::::::::::::..::::: ::::::                        
NP_001 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQA------------------------
               10        20        30                              

               70        80        90       100       110        
pF1KE2 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING
                       :....  .:.  ..::..:: .::..:::.::..: ::::. 
NP_001 ----------------TRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA
                         40        50        60        70        




118 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:17:38 2016 done: Mon Nov  7 20:17:39 2016
 Total Scan time:  4.950 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]