FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2462, 118 aa
  1>>>pF1KE2462 118 - 118 aa - 118 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3059+/-0.000799; mu= 2.2597+/- 0.048
 mean_var=128.5746+/-25.715, 0's: 0 Z-trim(111.9): 12  B-trim: 157 in 1/51
 Lambda= 0.113109
 statistics sampled from 12776 (12784) to 12776 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.393), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(32554)
CCDS6807.1 ATP6V1G1 gene_id:9550|Hs108|chr9        ( 118)  745 131.5 1.2e-31
CCDS4698.1 ATP6V1G2 gene_id:534|Hs108|chr6         ( 118)  497 91.0 1.8e-19
CCDS1395.1 ATP6V1G3 gene_id:127124|Hs108|chr1      ( 118)  427 79.6 5.1e-16
CCDS81414.1 ATP6V1G3 gene_id:127124|Hs108|chr1     ( 124)  401 75.3   1e-14


>>CCDS6807.1 ATP6V1G1 gene_id:9550|Hs108|chr9             (118 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 681.6  bits: 131.5 E(32554): 1.2e-31
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE2 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE2 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING
               70        80        90       100       110        

>>CCDS4698.1 ATP6V1G2 gene_id:534|Hs108|chr6              (118 aa)
 initn: 546 init1: 497 opt: 497  Z-score: 462.9  bits: 91.0 E(32554): 1.8e-19
Smith-Waterman score: 497; 64.1% identity (89.7% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KE2 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA
       ::::::::::::::::::::::..::::: ::::::::::: :.:::: .::.::..:. 
CCDS46 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE2 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING
       ::.::.:. :.:::. :....  .:.  ..::..:: .::..:::.::..: ::::. 
CCDS46 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA
               70        80        90       100       110        

>>CCDS1395.1 ATP6V1G3 gene_id:127124|Hs108|chr1           (118 aa)
 initn: 427 init1: 427 opt: 427  Z-score: 401.1  bits: 79.6 E(32554): 5.1e-16
Smith-Waterman score: 427; 54.8% identity (85.2% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE2 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA
       :.::::::.::::::::: .:. ::.:::..:::::::::..::.:::.::.:::. :..
CCDS13 MTSQSQGIHQLLQAEKRAKDKLEEAKKRKGKRLKQAKEEAMVEIDQYRMQRDKEFRLKQS
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE2 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING
         .::... : :.:..:  :.  :. .. .  . :...::..:::..:::: :::   
CCDS13 KIMGSQNNLSDEIEEQTLGKIQELNGHYNKYMESVMNQLLSMVCDMKPEIHVNYRATN
               70        80        90       100       110        

>>CCDS81414.1 ATP6V1G3 gene_id:127124|Hs108|chr1          (124 aa)
 initn: 295 init1: 295 opt: 401  Z-score: 377.9  bits: 75.3 E(32554): 1e-14
Smith-Waterman score: 401; 51.2% identity (81.0% similar) in 121 aa overlap (1-115:1-121)

               10        20              30        40        50    
pF1KE2 MASQSQGIQQLLQAEKRAAEKVSEARKR------KNRRLKQAKEEAQAEIEQYRLQREKE
       :.::::::.::::::::: .:. ::.:.      :..:::::::::..::.:::.::.::
CCDS81 MTSQSQGIHQLLQAEKRAKDKLEEAKKKTGTASGKGKRLKQAKEEAMVEIDQYRMQRDKE
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE2 FKAKEAAALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENY
       :. :..  .::... : :.:..:  :.  :. .. .  . :...::..:::..:::: ::
CCDS81 FRLKQSKIMGSQNNLSDEIEEQTLGKIQELNGHYNKYMESVMNQLLSMVCDMKPEIHVNY
               70        80        90       100       110       120

           
pF1KE2 RING
       :   
CCDS81 RATN
           




118 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:17:38 2016 done: Mon Nov  7 20:17:38 2016
 Total Scan time:  1.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]