FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2446, 715 aa
  1>>>pF1KE2446 715 - 715 aa - 715 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.2469+/-0.00167; mu= -17.4424+/- 0.099
 mean_var=417.7220+/-88.108, 0's: 0 Z-trim(106.6): 148  B-trim: 32 in 1/52
 Lambda= 0.062752
 statistics sampled from 8953 (9053) to 8953 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.599), E-opt: 0.2 (0.278), width:  16
 Scan time:  3.820

The best scores are:                                      opt bits E(32554)
CCDS43515.1 CCDC170 gene_id:80129|Hs108|chr6       ( 715) 4426 416.0 9.6e-116


>>CCDS43515.1 CCDC170 gene_id:80129|Hs108|chr6            (715 aa)
 initn: 4426 init1: 4426 opt: 4426  Z-score: 2191.5  bits: 416.0 E(32554): 9.6e-116
Smith-Waterman score: 4426; 99.4% identity (99.9% similar) in 715 aa overlap (1-715:1-715)

               10        20        30        40        50        60
pF1KE2 MSLDCTSHIALGAASPAPEETYDHLSEVPVTREQLNHYRNVAQNARSELAATLVKFECAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSLDCTSHIALGAASPAPEETYDHLSEVPVTREQLNHYRNVAQNARSELAATLVKFECAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEESAALSTSKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEESAALSTSKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 RTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 PDERNDKASDEDLILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PDERNDKASDEDLILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 REQKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEVSLLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 REQKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEVSLLKK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 SSSELEKSLKASQDAVTTSQSQYSSFREKIAALLRGRLSMTGSTEDTILEKIREMDSREE
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS43 SSSELEKSLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTEDTILEKIREMDSREE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 SRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAELVSGGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAELVSGGV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 LRDNLNFEKQKYLKFLDQLSQKMKLDQMAAELGFDMRLDVVLARTEQLVRLESNAVIENK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LRDNLNFEKQKYLKFLDQLSQKMKLDQMAAELGFDMRLDVVLARTEQLVRLESNAVIENK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 TIAHNLQRKLKTQKERLESKELHMSLLRQKIAQLEEEKQARTALVVERDNAHLTIRNLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TIAHNLQRKLKTQKERLESKELHMSLLRQKIAQLEEEKQARTALVVERDNAHLTIRNLQK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 KVERLQKELNTCQDLHTELKAKLADTNELKIKTLEQTKAIEDLNKSRDQLEKMKEKAEKK
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KVERLQKELNTCRDLHTELKAKLADTNELKIKTLEQTKAIEDLNKSRDQLEKMKEKAEKK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 LMSIKSELDTTEHEAKENKERARNMIEVVTSEMKTLKKSLEEAEKREKQLADFREVVSQM
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LMSVKSELDTTEHEAKENKERARNMIEVVTSEMKTLKKSLEEAEKREKQLADFREVVSQM
              610       620       630       640       650       660

              670       680       690       700       710     
pF1KE2 LGLNVTSLALPDYEIIKCLERLIHSHQHHFVTCACLKDVTTGQERHPQGHLQLLH
       ::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS43 LGLNVTSLALPDYEIIKCLERLVHSHQHHFVTCACLKDVTTGQERHPQGHLQLLH
              670       680       690       700       710     




715 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:09:16 2016 done: Mon Nov  7 20:09:17 2016
 Total Scan time:  3.820 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]