Result of FASTA (omim) for
pF1KE2439
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2439, 143 aa
1>>>pF1KE2439 143 - 143 aa - 143 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1216+/-0.000302; mu= 13.2397+/- 0.019
mean_var=82.0507+/-15.881, 0's: 0 Z-trim(119.6): 45 B-trim: 339 in 2/49
Lambda= 0.141590
statistics sampled from 33722 (33774) to 33722 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.396), width: 16
Scan time: 4.260
The best scores are: opt bits E(85289)
NP_001012333 (OMIM: 162096) midkine isoform a prec ( 143) 1019 216.7 9.9e-57
NP_002382 (OMIM: 162096) midkine isoform a precurs ( 143) 1019 216.7 9.9e-57
NP_001012334 (OMIM: 162096) midkine isoform a prec ( 143) 1019 216.7 9.9e-57
XP_011518418 (OMIM: 162096) PREDICTED: midkine iso ( 143) 1019 216.7 9.9e-57
NP_001257479 (OMIM: 162096) midkine isoform a prec ( 143) 1019 216.7 9.9e-57
NP_001257480 (OMIM: 162096) midkine isoform a prec ( 143) 1019 216.7 9.9e-57
XP_016873253 (OMIM: 162096) PREDICTED: midkine iso ( 143) 1019 216.7 9.9e-57
NP_001308315 (OMIM: 162095) pleiotrophin isoform 1 ( 168) 509 112.6 2.5e-25
NP_002816 (OMIM: 162095) pleiotrophin isoform 1 pr ( 168) 509 112.6 2.5e-25
XP_016867962 (OMIM: 162095) PREDICTED: pleiotrophi ( 167) 500 110.8 9.1e-25
NP_001308316 (OMIM: 162095) pleiotrophin isoform 2 ( 167) 500 110.8 9.1e-25
NP_001257481 (OMIM: 162096) midkine isoform b prec ( 87) 433 96.8 7.5e-21
>>NP_001012333 (OMIM: 162096) midkine isoform a precurso (143 aa)
initn: 1019 init1: 1019 opt: 1019 Z-score: 1139.5 bits: 216.7 E(85289): 9.9e-57
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143)
10 20 30 40 50 60
pF1KE2 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
70 80 90 100 110 120
130 140
pF1KE2 RVTKPCTPKTKAKAKAKKGKGKD
:::::::::::::::::::::::
NP_001 RVTKPCTPKTKAKAKAKKGKGKD
130 140
>>NP_002382 (OMIM: 162096) midkine isoform a precursor [ (143 aa)
initn: 1019 init1: 1019 opt: 1019 Z-score: 1139.5 bits: 216.7 E(85289): 9.9e-57
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143)
10 20 30 40 50 60
pF1KE2 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
70 80 90 100 110 120
130 140
pF1KE2 RVTKPCTPKTKAKAKAKKGKGKD
:::::::::::::::::::::::
NP_002 RVTKPCTPKTKAKAKAKKGKGKD
130 140
>>NP_001012334 (OMIM: 162096) midkine isoform a precurso (143 aa)
initn: 1019 init1: 1019 opt: 1019 Z-score: 1139.5 bits: 216.7 E(85289): 9.9e-57
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143)
10 20 30 40 50 60
pF1KE2 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
70 80 90 100 110 120
130 140
pF1KE2 RVTKPCTPKTKAKAKAKKGKGKD
:::::::::::::::::::::::
NP_001 RVTKPCTPKTKAKAKAKKGKGKD
130 140
>>XP_011518418 (OMIM: 162096) PREDICTED: midkine isoform (143 aa)
initn: 1019 init1: 1019 opt: 1019 Z-score: 1139.5 bits: 216.7 E(85289): 9.9e-57
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143)
10 20 30 40 50 60
pF1KE2 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
70 80 90 100 110 120
130 140
pF1KE2 RVTKPCTPKTKAKAKAKKGKGKD
:::::::::::::::::::::::
XP_011 RVTKPCTPKTKAKAKAKKGKGKD
130 140
>>NP_001257479 (OMIM: 162096) midkine isoform a precurso (143 aa)
initn: 1019 init1: 1019 opt: 1019 Z-score: 1139.5 bits: 216.7 E(85289): 9.9e-57
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143)
10 20 30 40 50 60
pF1KE2 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
70 80 90 100 110 120
130 140
pF1KE2 RVTKPCTPKTKAKAKAKKGKGKD
:::::::::::::::::::::::
NP_001 RVTKPCTPKTKAKAKAKKGKGKD
130 140
>>NP_001257480 (OMIM: 162096) midkine isoform a precurso (143 aa)
initn: 1019 init1: 1019 opt: 1019 Z-score: 1139.5 bits: 216.7 E(85289): 9.9e-57
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143)
10 20 30 40 50 60
pF1KE2 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
70 80 90 100 110 120
130 140
pF1KE2 RVTKPCTPKTKAKAKAKKGKGKD
:::::::::::::::::::::::
NP_001 RVTKPCTPKTKAKAKAKKGKGKD
130 140
>>XP_016873253 (OMIM: 162096) PREDICTED: midkine isoform (143 aa)
initn: 1019 init1: 1019 opt: 1019 Z-score: 1139.5 bits: 216.7 E(85289): 9.9e-57
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143)
10 20 30 40 50 60
pF1KE2 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
70 80 90 100 110 120
130 140
pF1KE2 RVTKPCTPKTKAKAKAKKGKGKD
:::::::::::::::::::::::
XP_016 RVTKPCTPKTKAKAKAKKGKGKD
130 140
>>NP_001308315 (OMIM: 162095) pleiotrophin isoform 1 pre (168 aa)
initn: 538 init1: 333 opt: 509 Z-score: 575.6 bits: 112.6 E(85289): 2.5e-25
Smith-Waterman score: 509; 48.4% identity (72.5% similar) in 153 aa overlap (2-142:9-161)
10 20 30 40 50
pF1KE2 MQHRGF---LLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSK
:.: : .: .. : :. .: : ::.: .: :.:.:: :. :.:.:
NP_001 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
10 20 30 40 50 60
60 70 80 90 100
pF1KE2 DCGVGFREGT-CGA---QTQRI-RCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQG
:::.: :::: :: ::.. ::..::::::.:::.:::.:. :: :: .:. :.: :
NP_001 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
70 80 90 100 110 120
110 120 130 140
pF1KE2 TLKKARYNAQCQETIRVTKPC----TPKTKAKAKAKKGKGKD
.::.: .::.::.:. ..::: :: .:..: :: .::
NP_001 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
130 140 150 160
>>NP_002816 (OMIM: 162095) pleiotrophin isoform 1 precur (168 aa)
initn: 538 init1: 333 opt: 509 Z-score: 575.6 bits: 112.6 E(85289): 2.5e-25
Smith-Waterman score: 509; 48.4% identity (72.5% similar) in 153 aa overlap (2-142:9-161)
10 20 30 40 50
pF1KE2 MQHRGF---LLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSK
:.: : .: .. : :. .: : ::.: .: :.:.:: :. :.:.:
NP_002 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
10 20 30 40 50 60
60 70 80 90 100
pF1KE2 DCGVGFREGT-CGA---QTQRI-RCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQG
:::.: :::: :: ::.. ::..::::::.:::.:::.:. :: :: .:. :.: :
NP_002 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
70 80 90 100 110 120
110 120 130 140
pF1KE2 TLKKARYNAQCQETIRVTKPC----TPKTKAKAKAKKGKGKD
.::.: .::.::.:. ..::: :: .:..: :: .::
NP_002 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
130 140 150 160
>>XP_016867962 (OMIM: 162095) PREDICTED: pleiotrophin is (167 aa)
initn: 539 init1: 334 opt: 500 Z-score: 565.7 bits: 110.8 E(85289): 9.1e-25
Smith-Waterman score: 500; 48.0% identity (72.0% similar) in 150 aa overlap (2-143:9-158)
10 20 30 40 50
pF1KE2 MQHRGF---LLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSK
:.: : .: .. : :. .: : ::.: .: :.:.:: :. :.:.:
XP_016 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
10 20 30 40 50 60
60 70 80 90 100
pF1KE2 DCGVGFREGT-CGA---QTQRI-RCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQG
:::.: :::: :: ::.. ::..::::::.:::.:::.:. :: :: .:. :.: :
XP_016 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
70 80 90 100 110 120
110 120 130 140
pF1KE2 TLKKARYNAQCQETIRVTKPCTPKTKAKAKAKKGKGKD
.::.: .::.::.:. ..::: :: : . .: : :.
XP_016 SLKRALHNAECQKTVTISKPCGKLTKPKPQESKKKKKEGKKQEKMLD
130 140 150 160
143 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 20:00:06 2016 done: Mon Nov 7 20:00:07 2016
Total Scan time: 4.260 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]