FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2439, 143 aa
  1>>>pF1KE2439 143 - 143 aa - 143 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7693+/-0.000632; mu= 15.5435+/- 0.038
 mean_var=82.4463+/-15.612, 0's: 0 Z-trim(113.4): 22  B-trim: 0 in 0/50
 Lambda= 0.141250
 statistics sampled from 14016 (14027) to 14016 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.431), width:  16
 Scan time:  1.540

The best scores are:                                      opt bits E(32554)
CCDS7919.1 MDK gene_id:4192|Hs108|chr11            ( 143) 1019 216.0 6.2e-57
CCDS5844.1 PTN gene_id:5764|Hs108|chr7             ( 168)  509 112.2 1.3e-25
CCDS59226.1 MDK gene_id:4192|Hs108|chr11           (  87)  433 96.4 3.9e-21


>>CCDS7919.1 MDK gene_id:4192|Hs108|chr11                 (143 aa)
 initn: 1019 init1: 1019 opt: 1019  Z-score: 1135.6  bits: 216.0 E(32554): 6.2e-57
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143)

               10        20        30        40        50        60
pF1KE2 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
               70        80        90       100       110       120

              130       140   
pF1KE2 RVTKPCTPKTKAKAKAKKGKGKD
       :::::::::::::::::::::::
CCDS79 RVTKPCTPKTKAKAKAKKGKGKD
              130       140   

>>CCDS5844.1 PTN gene_id:5764|Hs108|chr7                  (168 aa)
 initn: 538 init1: 333 opt: 509  Z-score: 573.1  bits: 112.2 E(32554): 1.3e-25
Smith-Waterman score: 509; 48.4% identity (72.5% similar) in 153 aa overlap (2-142:9-161)

                         10        20        30        40        50
pF1KE2        MQHRGF---LLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSK
               :.: :   .:  .. : :. .: : ::.: .:    :.:.:: :. :.:.: 
CCDS58 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               10        20        30        40        50        60

               60             70        80        90       100     
pF1KE2 DCGVGFREGT-CGA---QTQRI-RCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQG
       :::.: ::::  ::   ::..  ::..::::::.:::.:::.:. :: :: .:. :.: :
CCDS58 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
               70        80        90       100       110       120

         110       120           130       140         
pF1KE2 TLKKARYNAQCQETIRVTKPC----TPKTKAKAKAKKGKGKD      
       .::.: .::.::.:. ..:::     :: .:..: :: .::       
CCDS58 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
              130       140       150       160        

>>CCDS59226.1 MDK gene_id:4192|Hs108|chr11                (87 aa)
 initn: 449 init1: 433 opt: 433  Z-score: 492.9  bits: 96.4 E(32554): 3.9e-21
Smith-Waterman score: 456; 60.8% identity (60.8% similar) in 143 aa overlap (1-143:1-87)

               10        20        30        40        50        60
pF1KE2 MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGT
       :::::::::::::::::::::::::                                   
CCDS59 MQHRGFLLLTLLALLALTSAVAKKK-----------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KE2 CGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
                            :::::::::::::::::::::::::::::::::::::::
CCDS59 ---------------------ADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETI
                               30        40        50        60    

              130       140   
pF1KE2 RVTKPCTPKTKAKAKAKKGKGKD
       :::::::::::::::::::::::
CCDS59 RVTKPCTPKTKAKAKAKKGKGKD
           70        80       




143 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:00:06 2016 done: Mon Nov  7 20:00:06 2016
 Total Scan time:  1.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]