Result of FASTA (omim) for
pF1KE2428
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2428, 349 aa
1>>>pF1KE2428 349 - 349 aa - 349 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1210+/-0.000389; mu= 16.7374+/- 0.024
mean_var=59.4871+/-12.049, 0's: 0 Z-trim(111.8): 21 B-trim: 0 in 0/50
Lambda= 0.166289
statistics sampled from 20526 (20542) to 20526 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.241), width: 16
Scan time: 6.380
The best scores are: opt bits E(85289)
NP_005267 (OMIM: 138420,614480) glycerol-3-phospha ( 349) 2322 565.6 5.6e-161
NP_055956 (OMIM: 611777,611778) glycerol-3-phospha ( 351) 1733 424.3 1.9e-118
NP_001244128 (OMIM: 138420,614480) glycerol-3-phos ( 326) 1688 413.5 3.2e-115
XP_006713131 (OMIM: 611777,611778) PREDICTED: glyc ( 304) 1199 296.2 6.2e-80
>>NP_005267 (OMIM: 138420,614480) glycerol-3-phosphate d (349 aa)
initn: 2322 init1: 2322 opt: 2322 Z-score: 3011.1 bits: 565.6 E(85289): 5.6e-161
Smith-Waterman score: 2322; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349)
10 20 30 40 50 60
pF1KE2 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGP
250 260 270 280 290 300
310 320 330 340
pF1KE2 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
310 320 330 340
>>NP_055956 (OMIM: 611777,611778) glycerol-3-phosphate d (351 aa)
initn: 1733 init1: 1733 opt: 1733 Z-score: 2247.4 bits: 424.3 E(85289): 1.9e-118
Smith-Waterman score: 1733; 71.8% identity (90.5% similar) in 347 aa overlap (2-348:4-350)
10 20 30 40 50
pF1KE2 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQH
: :::::::::::::.:::.:.:. .: .: : :::::: ..:.:::.:::..:
NP_055 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL
:::::::::::: ::::. .. .:..:::.:.::.::::: .:::.. :.. .: ::.:
NP_055 ENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 IKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLK
:::.::::.::::::..: :..:: .:::::::::.::: ::::::::: : .: :.:
NP_055 IKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 ELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAF
::.::::::::::...::::.::::::.::::::::::: :::::::::::::::::::
NP_055 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE2 AKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQ
:..::.: ::.::::::::::::::::::::::.::::::::::.::.::::.:::::::
NP_055 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
250 260 270 280 290 300
300 310 320 330 340
pF1KE2 GPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
::.:. :.: ::..:::.:::::: :::..:::..:: :.. :::.::::
NP_055 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
310 320 330 340 350
>>NP_001244128 (OMIM: 138420,614480) glycerol-3-phosphat (326 aa)
initn: 1688 init1: 1688 opt: 1688 Z-score: 2189.5 bits: 413.5 E(85289): 3.2e-115
Smith-Waterman score: 2119; 93.4% identity (93.4% similar) in 349 aa overlap (1-349:1-326)
10 20 30 40 50 60
pF1KE2 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIK
::::::::::::: ::::::::::::::::::::::::
NP_001 VKYLPGHKLPPNV-----------------------FIGKICDQLKGHLKANATGISLIK
70 80 90
130 140 150 160 170 180
pF1KE2 GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE2 MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE2 LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGP
220 230 240 250 260 270
310 320 330 340
pF1KE2 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
280 290 300 310 320
>>XP_006713131 (OMIM: 611777,611778) PREDICTED: glycerol (304 aa)
initn: 1538 init1: 1199 opt: 1199 Z-score: 1556.0 bits: 296.2 E(85289): 6.2e-80
Smith-Waterman score: 1448; 64.8% identity (79.0% similar) in 347 aa overlap (2-348:4-303)
10 20 30 40 50
pF1KE2 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQH
: :::::::::::::.:::.:.:. .: .: : :::::: ..:.:::.:::..:
XP_006 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL
:::::::::::: ::
XP_006 ENVKYLPGHKLPENV---------------------------------------------
70
120 130 140 150 160 170
pF1KE2 IKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLK
:.::::.::::::..: :..:: .:::::::::.::: ::::::::: : .: :.:
XP_006 --GIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
80 90 100 110 120 130
180 190 200 210 220 230
pF1KE2 ELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAF
::.::::::::::...::::.::::::.::::::::::: :::::::::::::::::::
XP_006 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
140 150 160 170 180 190
240 250 260 270 280 290
pF1KE2 AKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQ
:..::.: ::.::::::::::::::::::::::.::::::::::.::.::::.:::::::
XP_006 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
200 210 220 230 240 250
300 310 320 330 340
pF1KE2 GPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
::.:. :.: ::..:::.:::::: :::..:::..:: :.. :::.::::
XP_006 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
260 270 280 290 300
349 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 19:51:21 2016 done: Mon Nov 7 19:51:22 2016
Total Scan time: 6.380 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]