FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2428, 349 aa
  1>>>pF1KE2428 349 - 349 aa - 349 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6321+/-0.000856; mu= 13.7495+/- 0.052
 mean_var=57.2430+/-11.394, 0's: 0 Z-trim(105.3): 25  B-trim: 0 in 0/48
 Lambda= 0.169517
 statistics sampled from 8364 (8377) to 8364 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.257), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS8799.1 GPD1 gene_id:2819|Hs108|chr12           ( 349) 2322 576.1 1.5e-164
CCDS33729.1 GPD1L gene_id:23171|Hs108|chr3         ( 351) 1733 432.1 3.4e-121
CCDS58229.1 GPD1 gene_id:2819|Hs108|chr12          ( 326) 1688 421.1 6.5e-118


>>CCDS8799.1 GPD1 gene_id:2819|Hs108|chr12                (349 aa)
 initn: 2322 init1: 2322 opt: 2322  Z-score: 3067.9  bits: 576.1 E(32554): 1.5e-164
Smith-Waterman score: 2322; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349)

               10        20        30        40        50        60
pF1KE2 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 VKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 VKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGP
              250       260       270       280       290       300

              310       320       330       340         
pF1KE2 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
              310       320       330       340         

>>CCDS33729.1 GPD1L gene_id:23171|Hs108|chr3              (351 aa)
 initn: 1733 init1: 1733 opt: 1733  Z-score: 2289.3  bits: 432.1 E(32554): 3.4e-121
Smith-Waterman score: 1733; 71.8% identity (90.5% similar) in 347 aa overlap (2-348:4-350)

                 10        20        30        40        50        
pF1KE2   MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQH
          :  :::::::::::::.:::.:.:. .: .:   : :::::: ..:.:::.:::..:
CCDS33 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE2 ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL
       :::::::::::: ::::. .. .:..:::.:.::.::::: .:::.. :..  .: ::.:
CCDS33 ENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITL
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KE2 IKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLK
       :::.::::.::::::..: :..:: .:::::::::.::: ::::::::: :   .: :.:
CCDS33 IKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE2 ELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAF
       ::.::::::::::...::::.::::::.:::::::::::  :::::::::::::::::::
CCDS33 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KE2 AKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQ
       :..::.: ::.::::::::::::::::::::::.::::::::::.::.::::.:::::::
CCDS33 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
              250       260       270       280       290       300

      300       310       320       330       340         
pF1KE2 GPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
       ::.:. :.: ::..:::.:::::: :::..:::..:: :.. :::.:::: 
CCDS33 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
              310       320       330       340       350 

>>CCDS58229.1 GPD1 gene_id:2819|Hs108|chr12               (326 aa)
 initn: 1688 init1: 1688 opt: 1688  Z-score: 2230.4  bits: 421.1 E(32554): 6.5e-118
Smith-Waterman score: 2119; 93.4% identity (93.4% similar) in 349 aa overlap (1-349:1-326)

               10        20        30        40        50        60
pF1KE2 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 VKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIK
       :::::::::::::                       ::::::::::::::::::::::::
CCDS58 VKYLPGHKLPPNV-----------------------FIGKICDQLKGHLKANATGISLIK
               70                               80        90       

              130       140       150       160       170       180
pF1KE2 GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL
       100       110       120       130       140       150       

              190       200       210       220       230       240
pF1KE2 MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK
       160       170       180       190       200       210       

              250       260       270       280       290       300
pF1KE2 LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGP
       220       230       240       250       260       270       

              310       320       330       340         
pF1KE2 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
       280       290       300       310       320      




349 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:51:21 2016 done: Mon Nov  7 19:51:21 2016
 Total Scan time:  1.880 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]