FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2364, 235 aa
  1>>>pF1KE2364 235 - 235 aa - 235 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3277+/-0.000733; mu= 7.0451+/- 0.044
 mean_var=142.0259+/-28.916, 0's: 0 Z-trim(114.8): 9  B-trim: 536 in 1/54
 Lambda= 0.107619
 statistics sampled from 15365 (15370) to 15365 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.472), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS1992.1 CD8A gene_id:925|Hs108|chr2             ( 235) 1600 258.8 2.3e-69
CCDS1993.1 CD8A gene_id:925|Hs108|chr2             ( 198) 1149 188.7 2.4e-48


>>CCDS1992.1 CD8A gene_id:925|Hs108|chr2                  (235 aa)
 initn: 1600 init1: 1600 opt: 1600  Z-score: 1358.9  bits: 258.8 E(32554): 2.3e-69
Smith-Waterman score: 1600; 99.6% identity (99.6% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KE2 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGCYFCSALSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS19 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA
              130       140       150       160       170       180

              190       200       210       220       230     
pF1KE2 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV
              190       200       210       220       230     

>>CCDS1993.1 CD8A gene_id:925|Hs108|chr2                  (198 aa)
 initn: 1181 init1: 1149 opt: 1149  Z-score: 981.6  bits: 188.7 E(32554): 2.4e-48
Smith-Waterman score: 1245; 83.8% identity (83.8% similar) in 235 aa overlap (1-235:1-198)

               10        20        30        40        50        60
pF1KE2 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGCYFCSALSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS19 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA
       :::::::::::::::::::::::::::::::::::::::::::::::::::    :    
CCDS19 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGA----G----
              130       140       150       160       170          

              190       200       210       220       230     
pF1KE2 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV
                                    ::::::::::::::::::::::::::
CCDS19 -----------------------------NRRRVCKCPRPVVKSGDKPSLSARYV
                                         180       190        




235 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:37:59 2016 done: Sun Nov  6 22:38:00 2016
 Total Scan time:  2.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]