FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2340, 170 aa
  1>>>pF1KE2340 170 - 170 aa - 170 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6228+/-0.000259; mu= 16.8743+/- 0.016
 mean_var=64.3831+/-12.586, 0's: 0 Z-trim(120.0): 16  B-trim: 18 in 1/55
 Lambda= 0.159841
 statistics sampled from 34613 (34629) to 34613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.406), width:  16
 Scan time:  4.970

The best scores are:                                      opt bits E(85289)
NP_077001 (OMIM: 615840) dCTP pyrophosphatase 1 [H ( 170) 1146 271.9 3.6e-73


>>NP_077001 (OMIM: 615840) dCTP pyrophosphatase 1 [Homo   (170 aa)
 initn: 1146 init1: 1146 opt: 1146  Z-score: 1434.6  bits: 271.9 E(85289): 3.6e-73
Smith-Waterman score: 1146; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170)

               10        20        30        40        50        60
pF1KE2 MSVAGGEIRGDTGGEDTAAPGRFSFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MSVAGGEIRGDTGGEDTAAPGRFSFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 VGEVGELAELFQWKTDGEPGPQGWSPRERAALQEELSDVLIYLVALAARCRVDLPLAVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 VGEVGELAELFQWKTDGEPGPQGWSPRERAALQEELSDVLIYLVALAARCRVDLPLAVLS
               70        80        90       100       110       120

              130       140       150       160       170
pF1KE2 KMDINRRRYPAHLARSSSRKYTELPHGAISEDQAVGPADIPCDSTGQTST
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 KMDINRRRYPAHLARSSSRKYTELPHGAISEDQAVGPADIPCDSTGQTST
              130       140       150       160       170




170 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:05:47 2016 done: Sun Nov  6 14:05:47 2016
 Total Scan time:  4.970 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]