FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2340, 170 aa
  1>>>pF1KE2340 170 - 170 aa - 170 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9212+/-0.000558; mu= 15.0957+/- 0.034
 mean_var=62.4178+/-12.198, 0's: 0 Z-trim(112.9): 5  B-trim: 2 in 1/52
 Lambda= 0.162338
 statistics sampled from 13583 (13585) to 13583 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.417), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS10680.1 DCTPP1 gene_id:79077|Hs108|chr16       ( 170) 1146 275.9 8.6e-75


>>CCDS10680.1 DCTPP1 gene_id:79077|Hs108|chr16            (170 aa)
 initn: 1146 init1: 1146 opt: 1146  Z-score: 1456.3  bits: 275.9 E(32554): 8.6e-75
Smith-Waterman score: 1146; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170)

               10        20        30        40        50        60
pF1KE2 MSVAGGEIRGDTGGEDTAAPGRFSFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSVAGGEIRGDTGGEDTAAPGRFSFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 VGEVGELAELFQWKTDGEPGPQGWSPRERAALQEELSDVLIYLVALAARCRVDLPLAVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VGEVGELAELFQWKTDGEPGPQGWSPRERAALQEELSDVLIYLVALAARCRVDLPLAVLS
               70        80        90       100       110       120

              130       140       150       160       170
pF1KE2 KMDINRRRYPAHLARSSSRKYTELPHGAISEDQAVGPADIPCDSTGQTST
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KMDINRRRYPAHLARSSSRKYTELPHGAISEDQAVGPADIPCDSTGQTST
              130       140       150       160       170




170 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:05:46 2016 done: Sun Nov  6 14:05:46 2016
 Total Scan time:  2.000 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]