FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2304, 300 aa
  1>>>pF1KE2304 300 - 300 aa - 300 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9204+/-0.000955; mu= 3.5284+/- 0.057
 mean_var=141.4819+/-27.990, 0's: 0 Z-trim(109.5): 29  B-trim: 0 in 0/51
 Lambda= 0.107826
 statistics sampled from 10897 (10914) to 10897 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.335), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS3626.1 SPP1 gene_id:6696|Hs108|chr4            ( 300) 2024 326.1 1.9e-89
CCDS43250.1 SPP1 gene_id:6696|Hs108|chr4           ( 314) 1639 266.3 2.2e-71
CCDS34027.1 SPP1 gene_id:6696|Hs108|chr4           ( 287) 1637 265.9 2.5e-71


>>CCDS3626.1 SPP1 gene_id:6696|Hs108|chr4                 (300 aa)
 initn: 2024 init1: 2024 opt: 2024  Z-score: 1719.2  bits: 326.1 E(32554): 1.9e-89
Smith-Waterman score: 2024; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)

               10        20        30        40        50        60
pF1KE2 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 PSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 DFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHME
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 SEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDES
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 NEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 NEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN
              250       260       270       280       290       300

>>CCDS43250.1 SPP1 gene_id:6696|Hs108|chr4                (314 aa)
 initn: 1627 init1: 1627 opt: 1639  Z-score: 1395.2  bits: 266.3 E(32554): 2.2e-71
Smith-Waterman score: 1986; 95.5% identity (95.5% similar) in 314 aa overlap (1-300:1-314)

               10        20        30        40        50          
pF1KE2 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQ--
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS43 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA
               10        20        30        40        50        60

                   60        70        80        90       100      
pF1KE2 ------------TLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQS
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VSSEETNDFKQETLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQS
               70        80        90       100       110       120

        110       120       130       140       150       160      
pF1KE2 DESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQ
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KE2 YPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSH
              190       200       210       220       230       240

        230       240       250       260       270       280      
pF1KE2 KQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKF
              250       260       270       280       290       300

        290       300
pF1KE2 RISHELDSASSEVN
       ::::::::::::::
CCDS43 RISHELDSASSEVN
              310    

>>CCDS34027.1 SPP1 gene_id:6696|Hs108|chr4                (287 aa)
 initn: 1821 init1: 1627 opt: 1637  Z-score: 1394.1  bits: 265.9 E(32554): 2.5e-71
Smith-Waterman score: 1811; 92.3% identity (94.3% similar) in 300 aa overlap (1-300:1-287)

               10        20        30        40        50        60
pF1KE2 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQTL
       :::::::::::::::::::::::::::::::      .::.       :.. : .  .::
CCDS34 MRIAVICFCLLGITCAIPVKQADSGSSEEKQ------NAVS-------SEETNDFKQETL
               10        20        30                     40       

               70        80        90       100       110       120
pF1KE2 PSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVT
        50        60        70        80        90       100       

              130       140       150       160       170       180
pF1KE2 DFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHME
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KE2 SEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDES
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KE2 NEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN
       230       240       250       260       270       280       




300 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:15:16 2016 done: Sun Nov  6 23:15:16 2016
 Total Scan time:  2.110 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]