Result of FASTA (omim) for
pF1KE2202
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2202, 943 aa
1>>>pF1KE2202 943 - 943 aa - 943 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5807+/-0.000522; mu= 5.4046+/- 0.032
mean_var=172.8157+/-35.655, 0's: 0 Z-trim(113.7): 60 B-trim: 571 in 2/48
Lambda= 0.097562
statistics sampled from 23090 (23120) to 23090 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.271), width: 16
Scan time: 10.030
The best scores are: opt bits E(85289)
NP_001803 (OMIM: 117141) centromere protein C [Hom ( 943) 6151 879.2 0
XP_006714127 (OMIM: 117141) PREDICTED: centromere ( 935) 6070 867.8 0
XP_011529844 (OMIM: 117141) PREDICTED: centromere ( 772) 4964 712.1 2.7e-204
>>NP_001803 (OMIM: 117141) centromere protein C [Homo sa (943 aa)
initn: 6151 init1: 6151 opt: 6151 Z-score: 4690.4 bits: 879.2 E(85289): 0
Smith-Waterman score: 6151; 100.0% identity (100.0% similar) in 943 aa overlap (1-943:1-943)
10 20 30 40 50 60
pF1KE2 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NSTRKIKDTCIQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSTRKIKDTCIQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALLQGRKSREKHHNILPKTLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALLQGRKSREKHHNILPKTLAN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 DKHSHKPHPVETSQPSDKTVLDTSYALIGETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKHSHKPHPVETSQPSDKTVLDTSYALIGETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 VGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 YSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE2 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE2 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL
850 860 870 880 890 900
910 920 930 940
pF1KE2 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR
:::::::::::::::::::::::::::::::::::::::::::
NP_001 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR
910 920 930 940
>>XP_006714127 (OMIM: 117141) PREDICTED: centromere prot (935 aa)
initn: 5241 init1: 5241 opt: 6070 Z-score: 4628.8 bits: 867.8 E(85289): 0
Smith-Waterman score: 6070; 99.0% identity (99.2% similar) in 943 aa overlap (1-943:1-935)
10 20 30 40 50 60
pF1KE2 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NSTRKIKDTCIQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NSTRKIKDTCIQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALLQGRKSREKHHNILPKTLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALLQGRKSREKHHNILPKTLAN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 DKHSHKPHPVETSQPSDKTVLDTSYALIGETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DKHSHKPHPVETSQPSDKTVLDTSYALIGETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 VGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 YSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE2 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL
::::::::::::::::::::::::::. :::::::::::::::::::::::::
XP_006 RKAKENIGKVNKKSNKKRICLDNDERS--------IPLGDPLQPTRVKDPETREIILMDL
790 800 810 820 830
850 860 870 880 890 900
pF1KE2 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL
840 850 860 870 880 890
910 920 930 940
pF1KE2 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR
:::::::::::::::::::::::::::::::::::::::::::
XP_006 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR
900 910 920 930
>>XP_011529844 (OMIM: 117141) PREDICTED: centromere prot (772 aa)
initn: 4963 init1: 4963 opt: 4964 Z-score: 3788.7 bits: 712.1 E(85289): 2.7e-204
Smith-Waterman score: 4964; 99.0% identity (99.4% similar) in 772 aa overlap (1-772:1-772)
10 20 30 40 50 60
pF1KE2 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NSTRKIKDTCIQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSTRKIKDTCIQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALLQGRKSREKHHNILPKTLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALLQGRKSREKHHNILPKTLAN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 DKHSHKPHPVETSQPSDKTVLDTSYALIGETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKHSHKPHPVETSQPSDKTVLDTSYALIGETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 VGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 YSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK
:::::::::::::::::::::::::::::::::::::::::::. : ..
XP_011 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSAECCYSCII
730 740 750 760 770
790 800 810 820 830 840
pF1KE2 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL
943 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:32:29 2016 done: Tue Nov 8 00:32:30 2016
Total Scan time: 10.030 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]