FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2202, 943 aa
  1>>>pF1KE2202 943 - 943 aa - 943 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0403+/-0.00128; mu= 8.5055+/- 0.076
 mean_var=146.0382+/-28.881, 0's: 0 Z-trim(105.9): 42  B-trim: 210 in 2/46
 Lambda= 0.106131
 statistics sampled from 8661 (8684) to 8661 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.267), width:  16
 Scan time:  4.000

The best scores are:                                      opt bits E(32554)
CCDS47063.1 CENPC gene_id:1060|Hs108|chr4          ( 943) 6151 954.6       0


>>CCDS47063.1 CENPC gene_id:1060|Hs108|chr4               (943 aa)
 initn: 6151 init1: 6151 opt: 6151  Z-score: 5097.6  bits: 954.6 E(32554):    0
Smith-Waterman score: 6151; 100.0% identity (100.0% similar) in 943 aa overlap (1-943:1-943)

               10        20        30        40        50        60
pF1KE2 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NSTRKIKDTCIQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NSTRKIKDTCIQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LATDVSSKNTPDSKKISSRNINDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RETYTFENSVNMLPSSTEVSVKTKKRLNFDDKVMLKKIEIDNKVSDEEDKTSEGQERKPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALLQGRKSREKHHNILPKTLAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALLQGRKSREKHHNILPKTLAN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 DKHSHKPHPVETSQPSDKTVLDTSYALIGETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DKHSHKPHPVETSQPSDKTVLDTSYALIGETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 VGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 YSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YSNSSVRNELPMHHNSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GGIVGHDEISRCSLSEPLESDEADLAKKKNLDCSRSTRSSKNEDNIMTAQNVPLKPQTSG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE2 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKNDVDDEEVHGSSDDSKQSKVIP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE2 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISGVLSPDTISSK
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE2 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE2 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLL
              850       860       870       880       890       900

              910       920       930       940   
pF1KE2 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR
       :::::::::::::::::::::::::::::::::::::::::::
CCDS47 CTLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR
              910       920       930       940   




943 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:32:28 2016 done: Tue Nov  8 00:32:28 2016
 Total Scan time:  4.000 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]