FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1978, 555 aa
  1>>>pF1KE1978     555 - 555 aa - 555 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1546+/-0.000735; mu= 20.4300+/- 0.044
 mean_var=85.2866+/-16.088, 0's: 0 Z-trim(110.7): 33  B-trim: 72 in 1/54
 Lambda= 0.138878
 statistics sampled from 11931 (11956) to 11931 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.358), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(33420)
CCDS7305.1 PRF1 gene_id:5551|Hs109|chr10           ( 555) 3879 787.1       0
CCDS3936.1 C6 gene_id:729|Hs109|chr5               ( 934)  356 81.5 5.2e-15


>>CCDS7305.1 PRF1 gene_id:5551|Hs109|chr10                (555 aa)
 initn: 3879 init1: 3879 opt: 3879  Z-score: 4200.9  bits: 787.1 E(33420):    0
Smith-Waterman score: 3879; 100.0% identity (100.0% similar) in 555 aa overlap (1-555:1-555)

               10        20        30        40        50        60
pF1KE1 MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLAGEGVDVTSLRRSGSFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLAGEGVDVTSLRRSGSFP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGCQRHVTRAKVSSTEAVARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGCQRHVTRAKVSSTEAVARD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 AARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQKTHQDQYSFSTDTVECRFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQKTHQDQYSFSTDTVECRFYS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 FHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFHQTYRERH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFHQTYRERH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 SEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPGSPGLVDYTLEPLHVLLDSQDPRREAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPGSPGLVDYTLEPLHVLLDSQDPRREAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 RRALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RRALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 FIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 QVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQ
              490       500       510       520       530       540

              550     
pF1KE1 MLLGEPPGNRSGAVW
       :::::::::::::::
CCDS73 MLLGEPPGNRSGAVW
              550     

>>CCDS3936.1 C6 gene_id:729|Hs109|chr5                    (934 aa)
 initn: 164 init1:  94 opt: 356  Z-score: 383.2  bits: 81.5 E(33420): 5.2e-15
Smith-Waterman score: 356; 24.5% identity (54.7% similar) in 424 aa overlap (28-438:177-581)

                  10        20        30        40        50       
pF1KE1    MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLAGEGVDVTSLRRSG
                                     .. : :... .:.. : :.:    . .  :
CCDS39 DSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIPSVQLMGNGFHFLAGEPRG
        150       160       170       180       190       200      

        60        70        80        90         100       110     
pF1KE1 SFPVDTQRFLRPDGTCTLCENALQEGTLQRLPLALTN--WRAQGSGCQRHVTRAKVSSTE
          :  . :    : :   ... . ..  :.:  : :  ...: .  . ..   :  .. 
CCDS39 E--VLDNSF--TGGICKTVKSS-RTSNPYRVPANLENVGFEVQTAEDDLKTDFYKDLTSL
          210         220        230       240       250       260 

         120       130       140       150       160       170     
pF1KE1 AVARDAARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQKTHQDQYSFSTDTVE
       .  ..   :. ..   ...:    .:.   ..  .:..: . : : .:. . ::      
CCDS39 GHNENQQGSFSSQGGSSFSVPIFYSSKRSENI--NHNSAFKQAIQASHKKDSSFIRIHKV
             270       280       290         300       310         

         180       190         200       210       220       230   
pF1KE1 CRFYSFHVVHTPPLH-PD-FKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRI
        .  .: ....  ::  : : .::. :: ..:..    : :.....:::.. .  :::  
CCDS39 MKVLNF-TTKAKDLHLSDVFLKALNHLPLEYNSAL---YSRIFDDFGTHYFTSGSLGGVY
     320        330       340       350          360       370     

           240       250       260       270       280       290   
pF1KE1 SALTALRTCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFH
       . :  . . ::   :::..:.. :. .:..  . .  . ..: . :  .: ..:  .:: 
CCDS39 DLLYQFSSEELKNSGLTEEEAKHCVRIETKKRVLFAKKTKVEHR-CTTNKLSEKHEGSFI
         380       390       400       410        420       430    

           300       310         320        330       340       350
pF1KE1 QTYRERHSEVVGGHHTSINDLLF--GIQAGPEQ-YSAWVNSLPGSPGLVDYTLEPLHVLL
       :  ..  : . ::.      : .  : ..  :. .: :..:.  .:...:. : :. : :
CCDS39 QGAEKSISLIRGGRSEYGAALAWEKGSSGLEEKTFSEWLESVKENPAVIDFELAPI-VDL
          440       450       460       470       480       490    

                  360       370        380        390       400    
pF1KE1 DSQDP----RREALRRALSQYLTDRARWRDCS-RPCPP-GRQKSPRDPCQCVCHGSAVTT
         . :    .:. ::.::..:    :..  :.  :::  ::       : :::...  : 
CCDS39 VRNIPCAVTKRNNLRKALQEYA---AKFDPCQCAPCPNNGRPTLSGTECLCVCQSG--TY
           500       510          520       530       540          

          410       420       430       440       450       460    
pF1KE1 QDCCPRQRGLAQLEVTFIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVR
        . : .:    . ...  : :: :..: :   .:                          
CCDS39 GENCEKQSPDYKSNAVDGQ-WGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQ
      550       560        570       580       590       600       

          470       480       490       500       510       520    
pF1KE1 LDFGDVLLATGGPLRLQVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLNHGHLKFRYHAR
                                                                   
CCDS39 EEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGED
       610       620       630       640       650       660       




555 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Jun 30 14:56:38 2019 done: Sun Jun 30 14:56:39 2019
 Total Scan time:  1.660 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]