FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1842, 358 aa
  1>>>pF1KE1842 358 - 358 aa - 358 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9555+/-0.000911; mu= -4.9026+/- 0.055
 mean_var=427.4258+/-87.347, 0's: 0 Z-trim(118.7): 24  B-trim: 193 in 1/54
 Lambda= 0.062036
 statistics sampled from 19752 (19775) to 19752 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.844), E-opt: 0.2 (0.607), width:  16
 Scan time:  3.660

The best scores are:                                      opt bits E(32554)
CCDS54243.1 CEBPA gene_id:1050|Hs108|chr19         ( 358) 2526 239.3 3.9e-63


>>CCDS54243.1 CEBPA gene_id:1050|Hs108|chr19              (358 aa)
 initn: 2526 init1: 2526 opt: 2526  Z-score: 1246.9  bits: 239.3 E(32554): 3.9e-63
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 358 aa overlap (1-358:1-358)

               10        20        30        40        50        60
pF1KE1 MESADFYEAEPRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MESADFYEAEPRPPMSSHLQSPPHAPSSAAFGFPRGAGPAQPPAPPAAPEPLGGICEHET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDYPGAPAGPGGAVM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PGGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 YQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YQPPPPPPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 LGAAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVRRERNNIAVRKSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LGAAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVRRERNNIAVRKSR
              250       260       270       280       290       300

              310       320       330       340       350        
pF1KE1 DKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNCA
              310       320       330       340       350        




358 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:58:38 2016 done: Sun Nov  6 21:58:39 2016
 Total Scan time:  3.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]