Result of FASTA (omim) for
pF1KE1824
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1824, 341 aa
1>>>pF1KE1824 341 - 341 aa - 341 aa
Library: /omim/omim.rfq.tfa
65951994 residues in 93482 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0468+/-0.000348; mu= 5.2294+/- 0.022
mean_var=189.5946+/-38.028, 0's: 0 Z-trim(119.9): 73 B-trim: 228 in 1/57
Lambda= 0.093145
statistics sampled from 35982 (36055) to 35982 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.386), width: 16
Scan time: 3.980
The best scores are: opt bits E(93482)
NP_006766 (OMIM: 609590) protein quaking isoform 1 ( 341) 2246 313.8 3.6e-85
XP_011534560 (OMIM: 609590) protein quaking isofor ( 340) 2229 311.6 1.8e-84
XP_016866991 (OMIM: 609590) protein quaking isofor ( 337) 2216 309.8 5.9e-84
NP_001288014 (OMIM: 609590) protein quaking isofor ( 333) 2177 304.6 2.2e-82
NP_996735 (OMIM: 609590) protein quaking isoform 2 ( 319) 2059 288.7 1.3e-77
NP_996737 (OMIM: 609590) protein quaking isoform 4 ( 319) 2057 288.4 1.5e-77
NP_996736 (OMIM: 609590) protein quaking isoform 3 ( 325) 2052 287.8 2.5e-77
XP_016866992 (OMIM: 609590) protein quaking isofor ( 318) 2042 286.4 6.2e-77
XP_016866993 (OMIM: 609590) protein quaking isofor ( 311) 1990 279.4 7.7e-75
XP_011534561 (OMIM: 609590) protein quaking isofor ( 317) 1980 278.1 2e-74
XP_011534563 (OMIM: 609590) protein quaking isofor ( 198) 1203 173.5 3.8e-43
XP_011534562 (OMIM: 609590) protein quaking isofor ( 293) 1043 152.1 1.5e-36
XP_005250815 (OMIM: 610421) KH domain-containing, ( 302) 479 76.3 1e-13
NP_006549 (OMIM: 610421) KH domain-containing, RNA ( 346) 479 76.4 1.1e-13
XP_011533822 (OMIM: 610487) KH domain-containing, ( 285) 475 75.8 1.4e-13
XP_016865834 (OMIM: 610487) KH domain-containing, ( 299) 475 75.8 1.4e-13
XP_016865832 (OMIM: 610487) KH domain-containing, ( 305) 475 75.8 1.5e-13
NP_689901 (OMIM: 610487) KH domain-containing, RNA ( 349) 475 75.9 1.6e-13
XP_011533821 (OMIM: 610487) KH domain-containing, ( 302) 473 75.5 1.7e-13
XP_016865831 (OMIM: 610487) KH domain-containing, ( 316) 473 75.6 1.8e-13
XP_011533819 (OMIM: 610487) KH domain-containing, ( 320) 473 75.6 1.8e-13
XP_011533818 (OMIM: 610487) KH domain-containing, ( 322) 473 75.6 1.8e-13
XP_016865830 (OMIM: 610487) KH domain-containing, ( 322) 473 75.6 1.8e-13
XP_016865828 (OMIM: 610487) KH domain-containing, ( 362) 473 75.6 2e-13
XP_016865829 (OMIM: 610487) KH domain-containing, ( 362) 473 75.6 2e-13
NP_001337551 (OMIM: 610487) KH domain-containing, ( 366) 473 75.6 2e-13
XP_016865825 (OMIM: 610487) KH domain-containing, ( 367) 473 75.6 2e-13
XP_016865824 (OMIM: 610487) KH domain-containing, ( 381) 473 75.6 2.1e-13
XP_016865823 (OMIM: 610487) KH domain-containing, ( 413) 473 75.7 2.2e-13
XP_011533817 (OMIM: 610487) KH domain-containing, ( 324) 470 75.2 2.4e-13
XP_011515100 (OMIM: 610421) KH domain-containing, ( 303) 469 75.0 2.5e-13
NP_006550 (OMIM: 602489) KH domain-containing, RNA ( 443) 467 74.9 4.1e-13
XP_024302820 (OMIM: 610421) KH domain-containing, ( 274) 451 72.6 1.3e-12
XP_005250814 (OMIM: 610421) KH domain-containing, ( 318) 451 72.6 1.4e-12
XP_011515099 (OMIM: 610421) KH domain-containing, ( 319) 451 72.6 1.4e-12
XP_011515098 (OMIM: 610421) KH domain-containing, ( 346) 451 72.6 1.5e-12
XP_011515101 (OMIM: 610421) KH domain-containing, ( 252) 433 70.1 6.3e-12
XP_016873735 (OMIM: 601516) splicing factor 1 isof ( 542) 328 56.3 2e-07
XP_011543550 (OMIM: 601516) splicing factor 1 isof ( 545) 328 56.3 2e-07
NP_973727 (OMIM: 601516) splicing factor 1 isoform ( 548) 328 56.3 2e-07
NP_001333293 (OMIM: 601516) splicing factor 1 isof ( 568) 328 56.3 2.1e-07
NP_973726 (OMIM: 601516) splicing factor 1 isoform ( 571) 328 56.3 2.1e-07
XP_011543548 (OMIM: 601516) splicing factor 1 isof ( 582) 328 56.3 2.1e-07
XP_011543549 (OMIM: 601516) splicing factor 1 isof ( 582) 328 56.3 2.1e-07
XP_011543547 (OMIM: 601516) splicing factor 1 isof ( 585) 328 56.3 2.1e-07
NP_001333292 (OMIM: 601516) splicing factor 1 isof ( 608) 328 56.3 2.2e-07
XP_024304447 (OMIM: 601516) splicing factor 1 isof ( 611) 328 56.3 2.2e-07
XP_011543546 (OMIM: 601516) splicing factor 1 isof ( 612) 328 56.3 2.2e-07
NP_001171502 (OMIM: 601516) splicing factor 1 isof ( 613) 328 56.3 2.2e-07
XP_016873733 (OMIM: 601516) splicing factor 1 isof ( 613) 328 56.3 2.2e-07
>>NP_006766 (OMIM: 609590) protein quaking isoform 1 [Ho (341 aa)
initn: 2246 init1: 2246 opt: 2246 Z-score: 1650.7 bits: 313.8 E(93482): 3.6e-85
Smith-Waterman score: 2246; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)
10 20 30 40 50 60
pF1KE1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
250 260 270 280 290 300
310 320 330 340
pF1KE1 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN
:::::::::::::::::::::::::::::::::::::::::
NP_006 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN
310 320 330 340
>>XP_011534560 (OMIM: 609590) protein quaking isoform X1 (340 aa)
initn: 2227 init1: 1391 opt: 2229 Z-score: 1638.4 bits: 311.6 E(93482): 1.8e-84
Smith-Waterman score: 2229; 99.7% identity (99.7% similar) in 341 aa overlap (1-341:1-340)
10 20 30 40 50 60
pF1KE1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
XP_011 PAAEGEDSLKKMQLMELAILNGTYRDANIKSP-LAFSLAATAQAAPRIITGPAPVLPPAA
190 200 210 220 230
250 260 270 280 290 300
pF1KE1 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
240 250 260 270 280 290
310 320 330 340
pF1KE1 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN
:::::::::::::::::::::::::::::::::::::::::
XP_011 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN
300 310 320 330 340
>>XP_016866991 (OMIM: 609590) protein quaking isoform X2 (337 aa)
initn: 2216 init1: 2216 opt: 2216 Z-score: 1629.0 bits: 309.8 E(93482): 5.9e-84
Smith-Waterman score: 2216; 100.0% identity (100.0% similar) in 336 aa overlap (1-336:1-336)
10 20 30 40 50 60
pF1KE1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
250 260 270 280 290 300
310 320 330 340
pF1KE1 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN
::::::::::::::::::::::::::::::::::::
XP_016 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRG
310 320 330
>>NP_001288014 (OMIM: 609590) protein quaking isoform 5 (333 aa)
initn: 2189 init1: 1391 opt: 2177 Z-score: 1600.7 bits: 304.6 E(93482): 2.2e-82
Smith-Waterman score: 2177; 97.7% identity (97.7% similar) in 341 aa overlap (1-341:1-333)
10 20 30 40 50 60
pF1KE1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
:::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_001 PAAEGEDSLKKMQLMELAILNGTYRDANIKSP--------TAQAAPRIITGPAPVLPPAA
190 200 210 220 230
250 260 270 280 290 300
pF1KE1 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
240 250 260 270 280 290
310 320 330 340
pF1KE1 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN
:::::::::::::::::::::::::::::::::::::::::
NP_001 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN
300 310 320 330
>>NP_996735 (OMIM: 609590) protein quaking isoform 2 [Ho (319 aa)
initn: 2057 init1: 2057 opt: 2059 Z-score: 1515.3 bits: 288.7 E(93482): 1.3e-77
Smith-Waterman score: 2059; 99.1% identity (99.1% similar) in 318 aa overlap (1-317:1-318)
10 20 30 40 50 60
pF1KE1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
250 260 270 280 290 300
310 320 330 340
pF1KE1 LEYPIEPSGVLG-AVATKVRRHDMRVHPYQRIVTADRAATGN
:::::::::::: : ::
NP_996 LEYPIEPSGVLGMAFPTKG
310
>>NP_996737 (OMIM: 609590) protein quaking isoform 4 [Ho (319 aa)
initn: 2057 init1: 2057 opt: 2057 Z-score: 1513.8 bits: 288.4 E(93482): 1.5e-77
Smith-Waterman score: 2057; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)
10 20 30 40 50 60
pF1KE1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
250 260 270 280 290 300
310 320 330 340
pF1KE1 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN
::::::::::::
NP_996 LEYPIEPSGVLGKFFSPWG
310
>>NP_996736 (OMIM: 609590) protein quaking isoform 3 [Ho (325 aa)
initn: 2049 init1: 2049 opt: 2052 Z-score: 1510.1 bits: 287.8 E(93482): 2.5e-77
Smith-Waterman score: 2052; 96.3% identity (97.2% similar) in 326 aa overlap (1-326:1-325)
10 20 30 40 50 60
pF1KE1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
250 260 270 280 290 300
310 320 330 340
pF1KE1 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN
::::::::::: . : :. .:
NP_996 LEYPIEPSGVLEWIEMPVM-PDISAH
310 320
>>XP_016866992 (OMIM: 609590) protein quaking isoform X3 (318 aa)
initn: 2038 init1: 1391 opt: 2042 Z-score: 1503.0 bits: 286.4 E(93482): 6.2e-77
Smith-Waterman score: 2042; 98.7% identity (98.7% similar) in 318 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KE1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
XP_016 PAAEGEDSLKKMQLMELAILNGTYRDANIKSP-LAFSLAATAQAAPRIITGPAPVLPPAA
190 200 210 220 230
250 260 270 280 290 300
pF1KE1 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
240 250 260 270 280 290
310 320 330 340
pF1KE1 LEYPIEPSGVLG-AVATKVRRHDMRVHPYQRIVTADRAATGN
:::::::::::: : ::
XP_016 LEYPIEPSGVLGMAFPTKG
300 310
>>XP_016866993 (OMIM: 609590) protein quaking isoform X5 (311 aa)
initn: 2000 init1: 1391 opt: 1990 Z-score: 1465.3 bits: 279.4 E(93482): 7.7e-75
Smith-Waterman score: 1990; 96.5% identity (96.5% similar) in 318 aa overlap (1-317:1-310)
10 20 30 40 50 60
pF1KE1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
:::::::::::::::::::::::::::::::: ::::::::::::::::::::
XP_016 PAAEGEDSLKKMQLMELAILNGTYRDANIKSP--------TAQAAPRIITGPAPVLPPAA
190 200 210 220 230
250 260 270 280 290 300
pF1KE1 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
240 250 260 270 280 290
310 320 330 340
pF1KE1 LEYPIEPSGVLG-AVATKVRRHDMRVHPYQRIVTADRAATGN
:::::::::::: : ::
XP_016 LEYPIEPSGVLGMAFPTKG
300 310
>>XP_011534561 (OMIM: 609590) protein quaking isoform X4 (317 aa)
initn: 1992 init1: 1391 opt: 1980 Z-score: 1458.0 bits: 278.1 E(93482): 2e-74
Smith-Waterman score: 1983; 93.9% identity (94.8% similar) in 326 aa overlap (1-326:1-317)
10 20 30 40 50 60
pF1KE1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
:::::::::::::::::::::::::::::::: ::::::::::::::::::::
XP_011 PAAEGEDSLKKMQLMELAILNGTYRDANIKSP--------TAQAAPRIITGPAPVLPPAA
190 200 210 220 230
250 260 270 280 290 300
pF1KE1 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
240 250 260 270 280 290
310 320 330 340
pF1KE1 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN
::::::::::: . : :. .:
XP_011 LEYPIEPSGVLEWIEMPVM-PDISAH
300 310
341 residues in 1 query sequences
65951994 residues in 93482 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Jun 20 10:35:55 2019 done: Thu Jun 20 10:35:55 2019
Total Scan time: 3.980 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]