FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1803, 317 aa
  1>>>pF1KE1803 317 - 317 aa - 317 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2738+/-0.000734; mu= 8.9134+/- 0.045
 mean_var=133.4276+/-26.552, 0's: 0 Z-trim(114.0): 9  B-trim: 9 in 1/53
 Lambda= 0.111033
 statistics sampled from 14577 (14585) to 14577 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.448), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS9384.1 TNFSF11 gene_id:8600|Hs108|chr13        ( 317) 2157 356.0 2.2e-98
CCDS9385.1 TNFSF11 gene_id:8600|Hs108|chr13        ( 244) 1640 273.1 1.5e-73


>>CCDS9384.1 TNFSF11 gene_id:8600|Hs108|chr13             (317 aa)
 initn: 2157 init1: 2157 opt: 2157  Z-score: 1879.6  bits: 356.0 E(32554): 2.2e-98
Smith-Waterman score: 2157; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KE1 MRRASRDYTKYLRGSEEMGGGPGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLGLGQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MRRASRDYTKYLRGSEEMGGGPGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLGLGQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VCSVALFFYFRAQMDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VCSVALFFYFRAQMDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 QAFQGAVQKELQHIVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 QAFQGAVQKELQHIVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 KVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 YVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 YVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLD
              250       260       270       280       290       300

              310       
pF1KE1 PDQDATYFGAFKVRDID
       :::::::::::::::::
CCDS93 PDQDATYFGAFKVRDID
              310       

>>CCDS9385.1 TNFSF11 gene_id:8600|Hs108|chr13             (244 aa)
 initn: 1640 init1: 1640 opt: 1640  Z-score: 1433.7  bits: 273.1 E(32554): 1.5e-73
Smith-Waterman score: 1640; 100.0% identity (100.0% similar) in 244 aa overlap (74-317:1-244)

            50        60        70        80        90       100   
pF1KE1 ASRSMFVALLGLGLGQVVCSVALFFYFRAQMDPNRISEDGTHCIYRILRLHENADFQDTT
                                     ::::::::::::::::::::::::::::::
CCDS93                               MDPNRISEDGTHCIYRILRLHENADFQDTT
                                             10        20        30

           110       120       130       140       150       160   
pF1KE1 LESQDTKLIPDSCRRIKQAFQGAVQKELQHIVGSQHIRAEKAMVDGSWLDLAKRSKLEAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LESQDTKLIPDSCRRIKQAFQGAVQKELQHIVGSQHIRAEKAMVDGSWLDLAKRSKLEAQ
               40        50        60        70        80        90

           170       180       190       200       210       220   
pF1KE1 PFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYANICFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 PFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYANICFR
              100       110       120       130       140       150

           230       240       250       260       270       280   
pF1KE1 HHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVGGFFKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 HHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVGGFFKL
              160       170       180       190       200       210

           290       300       310       
pF1KE1 RSGEEISIEVSNPSLLDPDQDATYFGAFKVRDID
       ::::::::::::::::::::::::::::::::::
CCDS93 RSGEEISIEVSNPSLLDPDQDATYFGAFKVRDID
              220       230       240    




317 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 17:20:58 2016 done: Tue Nov  8 17:20:58 2016
 Total Scan time:  2.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]