FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1772, 279 aa
  1>>>pF1KE1772     279 - 279 aa - 279 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9587+/-0.000696; mu= 1.3782+/- 0.042
 mean_var=241.5875+/-47.507, 0's: 0 Z-trim(118.6): 6  B-trim: 0 in 0/54
 Lambda= 0.082516
 statistics sampled from 19848 (19854) to 19848 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.594), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(33420)
CCDS7455.1 FRAT1 gene_id:10023|Hs109|chr10         ( 279) 1913 239.4 2.2e-63
CCDS7456.1 FRAT2 gene_id:23401|Hs109|chr10         ( 233)  872 115.4   4e-26


>>CCDS7455.1 FRAT1 gene_id:10023|Hs109|chr10              (279 aa)
 initn: 1913 init1: 1913 opt: 1913  Z-score: 1251.5  bits: 239.4 E(33420): 2.2e-63
Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)

               10        20        30        40        50        60
pF1KE1 MPCRREEEEEAGEEAEGEEEEEDSFLLLQQSVALGSSGEVDRLVAQIGETLQLDAAQHSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MPCRREEEEEAGEEAEGEEEEEDSFLLLQQSVALGSSGEVDRLVAQIGETLQLDAAQHSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ASPCGPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAETVGPAPPGVLRCALGDRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ASPCGPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAETVGPAPPGVLRCALGDRGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VRGRAAPYCVAELATGPSALSPLPPQADLDGPPGAGKQGIPQPLSGPCRRGWLRGAAASR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VRGRAAPYCVAELATGPSALSPLPPQADLDGPPGAGKQGIPQPLSGPCRRGWLRGAAASR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RLQQRRGSQPETRTGDDDPHRLLQQLVLSGNLIKEAVRRLHSRRLQLRAKLPQRPLLGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RLQQRRGSQPETRTGDDDPHRLLQQLVLSGNLIKEAVRRLHSRRLQLRAKLPQRPLLGPL
              190       200       210       220       230       240

              250       260       270         
pF1KE1 SAPVHEPPSPRSPRAACSDPGASGRAQLRTGDGVLVPGS
       :::::::::::::::::::::::::::::::::::::::
CCDS74 SAPVHEPPSPRSPRAACSDPGASGRAQLRTGDGVLVPGS
              250       260       270         

>>CCDS7456.1 FRAT2 gene_id:23401|Hs109|chr10              (233 aa)
 initn: 1169 init1: 868 opt: 872  Z-score: 582.8  bits: 115.4 E(33420): 4e-26
Smith-Waterman score: 1136; 71.2% identity (78.0% similar) in 264 aa overlap (1-263:1-231)

               10        20        30        40        50        60
pF1KE1 MPCRREEEEEAGEEAEGEEEEEDSFLLLQQSVALGSSGEVDRLVAQIGETLQLDAAQHSP
       :::::::::::::::::::::.::::::::::.:::::::::::::::::::::::: ::
CCDS74 MPCRREEEEEAGEEAEGEEEEDDSFLLLQQSVTLGSSGEVDRLVAQIGETLQLDAAQDSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ASPCGPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAETVGPAPPGVLRCALGDRGR
       ::::.:::.:::::::::::::::::: :::::::::: :::::::: :.::::::::::
CCDS74 ASPCAPPGVPLRAPGPLAAAVPADKARPPAVPLLLPPASAETVGPAPSGALRCALGDRGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VRGRAAPYCVAELATGPSALSPLPPQADLDGPPGAGKQGIPQPLSGPCRRGWLRGAAASR
       ::::::::::::.:.:::::            ::            :::::::: :..::
CCDS74 VRGRAAPYCVAEVAAGPSAL------------PG------------PCRRGWLRDAVTSR
              130       140                               150      

              190       200       210       220       230       240
pF1KE1 RLQQRRGSQPETRTGDDDPHRLLQQLVLSGNLIKEAVRRLHSRRLQLRAKLPQRPLLGPL
       :::::: .:  .:.::::::::::::::::::::::::::.     . :        :: 
CCDS74 RLQQRRWTQAGARAGDDDPHRLLQQLVLSGNLIKEAVRRLQRAVAAVAAT-------GPA
        160       170       180       190       200                

              250        260       270         
pF1KE1 SAPVHEPPSPRS-PRAACSDPGASGRAQLRTGDGVLVPGS
       :::   : . :: :     .:..:                
CCDS74 SAP--GPGGGRSGPDRIALQPSGSLL              
     210         220       230                 




279 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:44:33 2019 done: Thu Oct 24 21:44:33 2019
 Total Scan time:  1.660 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]