FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1746, 250 aa
  1>>>pF1KE1746     250 - 250 aa - 250 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3048+/-0.000818; mu= 14.7043+/- 0.049
 mean_var=64.3639+/-13.120, 0's: 0 Z-trim(106.2): 20  B-trim: 8 in 1/51
 Lambda= 0.159865
 statistics sampled from 8968 (8983) to 8968 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.269), width:  16
 Scan time:  1.140

The best scores are:                                      opt bits E(33420)
CCDS888.1 CD58 gene_id:965|Hs109|chr1              ( 250) 1685 397.1 5.9e-111
CCDS44199.1 CD58 gene_id:965|Hs109|chr1            ( 248) 1666 392.8 1.2e-109


>>CCDS888.1 CD58 gene_id:965|Hs109|chr1                   (250 aa)
 initn: 1685 init1: 1685 opt: 1685  Z-score: 2105.7  bits: 397.1 E(33420): 5.9e-111
Smith-Waterman score: 1685; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250)

               10        20        30        40        50        60
pF1KE1 MVAGSDAGRALGVLSVVCLLHCFGFISCFSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MVAGSDAGRALGVLSVVCLLHCFGFISCFSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMEND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMEND
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LPQKIQCTLSNPLFNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLYMNGILKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LPQKIQCTLSNPLFNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLYMNGILKC
              190       200       210       220       230       240

              250
pF1KE1 DRKPDRTNSN
       ::::::::::
CCDS88 DRKPDRTNSN
              250

>>CCDS44199.1 CD58 gene_id:965|Hs109|chr1                 (248 aa)
 initn: 1666 init1: 1666 opt: 1666  Z-score: 2082.1  bits: 392.8 E(33420): 1.2e-109
Smith-Waterman score: 1666; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE1 MVAGSDAGRALGVLSVVCLLHCFGFISCFSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MVAGSDAGRALGVLSVVCLLHCFGFISCFSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMEND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMEND
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LPQKIQCTLSNPLFNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLYMNGILKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPQKIQCTLSNPLFNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLYMNGILKC
              190       200       210       220       230       240

              250
pF1KE1 DRKPDRTNSN
       :::::::   
CCDS44 DRKPDRTK  
                 




250 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Feb 19 20:35:49 2021 done: Fri Feb 19 20:35:49 2021
 Total Scan time:  1.140 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]