FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1686, 198 aa
  1>>>pF1KE1686 198 - 198 aa - 198 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1610+/-0.000655; mu= 14.0224+/- 0.039
 mean_var=58.6540+/-11.791, 0's: 0 Z-trim(109.7): 13  B-trim: 41 in 1/49
 Lambda= 0.167466
 statistics sampled from 11074 (11086) to 11074 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.341), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS6892.1 LCN2 gene_id:3934|Hs108|chr9            ( 198) 1337 330.7 3.6e-91
CCDS7018.2 LCN12 gene_id:286256|Hs108|chr9         ( 192)  373 97.8 4.6e-21
CCDS7019.1 PTGDS gene_id:5730|Hs108|chr9           ( 190)  323 85.7   2e-17


>>CCDS6892.1 LCN2 gene_id:3934|Hs108|chr9                 (198 aa)
 initn: 1337 init1: 1337 opt: 1337  Z-score: 1750.2  bits: 330.7 E(32554): 3.6e-91
Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KE1 MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGNA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVPGCQPGEFTLGNIKSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVPGCQPGEFTLGNIKSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSKSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSKSLG
              130       140       150       160       170       180

              190        
pF1KE1 LPENHIVFPVPIDQCIDG
       ::::::::::::::::::
CCDS68 LPENHIVFPVPIDQCIDG
              190        

>>CCDS7018.2 LCN12 gene_id:286256|Hs108|chr9              (192 aa)
 initn: 440 init1: 251 opt: 373  Z-score: 491.7  bits: 97.8 E(32554): 4.6e-21
Smith-Waterman score: 397; 35.3% identity (66.8% similar) in 184 aa overlap (6-189:7-180)

                10        20        30        40        50         
pF1KE1  MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGN
             ::: :.:: .:.::    :   .: ::    :.: .:: :::::.:.:.:::::
CCDS70 MRLLCGLWLWLSLLKVLQAQ----TPTPLPLPP----PMQ-SFQGNQFQGEWFVLGLAGN
               10        20                30         40        50 

      60        70        80        90       100       110         
pF1KE1 AILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVPGCQPGEFTLGNIKS
       ..  : .   . ... .::..:  ..: ... : ..:: :  ...:. :::.::. .   
CCDS70 SFRPEHRALLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVLIPAAQPGQFTVDH-GV
              60        70        80        90       100        110

     120       130       140       150       160       170         
pF1KE1 YPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSKSL
        ::     .:::...:.: :... .. ..    ..:.: ::.  :     ..:: .... 
CCDS70 EPGADREETRVVDSDYTQFALMLSRRHTSRLAVLRISLLGRSWLLPPGTLDQFICLGRAQ
              120       130       140       150       160       170

     180       190           
pF1KE1 GLPENHIVFPVPIDQCIDG   
       :: ...::::            
CCDS70 GLSDDNIVFPDVTGWSPQASVC
              180       190  

>>CCDS7019.1 PTGDS gene_id:5730|Hs108|chr9                (190 aa)
 initn: 281 init1:  99 opt: 323  Z-score: 426.5  bits: 85.7 E(32554): 2e-17
Smith-Waterman score: 360; 35.8% identity (62.7% similar) in 193 aa overlap (6-196:7-187)

                10        20        30        40        50         
pF1KE1  MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGN
             ::.::::::.:        .::  : : ..: .: :::...: :.:. .:::.:
CCDS70 MATHHTLWMGLALLGVL--------GDL-QAAPEAQVSVQPNFQQDKFLGRWFSAGLASN
               10                20         30        40        50 

      60         70        80        90       100       110        
pF1KE1 AI-LREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVPGCQPGEFTLGNIK
       .  ::: :   .:  ..     : . :.::...::..:.     . :. . : ..    .
CCDS70 SSWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSY---R
              60        70        80        90       100           

      120       130       140       150        160       170       
pF1KE1 SYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKI-TLYGRTKELTSELKENFIRFSK
       :    ..: : :: :.:.:.:... .  .   : :.. :::.::.   .::::.:  : :
CCDS70 SPHWGSTYSVSVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCK
      110       120       130       140       150       160        

       180       190         
pF1KE1 SLGLPENHIVFPVPIDQCIDG 
       . :. :. :::    :.:.   
CCDS70 AQGFTEDTIVFLPQTDKCMTEQ
      170       180       190




198 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:55:42 2016 done: Sun Nov  6 09:55:42 2016
 Total Scan time:  1.950 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]