FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1596, 354 aa
  1>>>pF1KE1596 354 - 354 aa - 354 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0297+/-0.00092; mu= -3.3145+/- 0.056
 mean_var=248.1513+/-50.887, 0's: 0 Z-trim(114.8): 18  B-trim: 279 in 1/52
 Lambda= 0.081417
 statistics sampled from 15357 (15373) to 15357 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.472), width:  16
 Scan time:  3.290

The best scores are:                                      opt bits E(32554)
CCDS11114.1 CD68 gene_id:968|Hs108|chr17           ( 354) 2345 287.8 9.6e-78
CCDS58512.1 CD68 gene_id:968|Hs108|chr17           ( 327) 2072 255.7 4.1e-68


>>CCDS11114.1 CD68 gene_id:968|Hs108|chr17                (354 aa)
 initn: 2345 init1: 2345 opt: 2345  Z-score: 1509.2  bits: 287.8 E(32554): 9.6e-78
Smith-Waterman score: 2345; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)

               10        20        30        40        50        60
pF1KE1 MRLAVLFSGALLGLLAAQGTGNDCPHKKSATLLPSFTVTPTVTESTGTTSHRTTKSHKTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MRLAVLFSGALLGLLAAQGTGNDCPHKKSATLLPSFTVTPTVTESTGTTSHRTTKSHKTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 THRTTTTGTTSHGPTTATHNPTTTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 THRTTTTGTTSHGPTTATHNPTTTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 MYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYLSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYLSY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 MAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLLSLRLQAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLLSLRLQAA
              250       260       270       280       290       300

              310       320       330       340       350    
pF1KE1 QLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQAL
              310       320       330       340       350    

>>CCDS58512.1 CD68 gene_id:968|Hs108|chr17                (327 aa)
 initn: 2072 init1: 2072 opt: 2072  Z-score: 1336.4  bits: 255.7 E(32554): 4.1e-68
Smith-Waterman score: 2100; 92.4% identity (92.4% similar) in 354 aa overlap (1-354:1-327)

               10        20        30        40        50        60
pF1KE1 MRLAVLFSGALLGLLAAQGTGNDCPHKKSATLLPSFTVTPTVTESTGTTSHRTTKSHKTT
       ::::::::::::::::                           :::::::::::::::::
CCDS58 MRLAVLFSGALLGLLA---------------------------ESTGTTSHRTTKSHKTT
               10                                   20        30   

               70        80        90       100       110       120
pF1KE1 THRTTTTGTTSHGPTTATHNPTTTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 THRTTTTGTTSHGPTTATHNPTTTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNAT
            40        50        60        70        80        90   

              130       140       150       160       170       180
pF1KE1 VHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRV
           100       110       120       130       140       150   

              190       200       210       220       230       240
pF1KE1 MYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYLSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYLSY
           160       170       180       190       200       210   

              250       260       270       280       290       300
pF1KE1 MAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLLSLRLQAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLLSLRLQAA
           220       230       240       250       260       270   

              310       320       330       340       350    
pF1KE1 QLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQAL
           280       290       300       310       320       




354 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:22:11 2016 done: Sat Nov  5 19:22:12 2016
 Total Scan time:  3.290 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]