Result of FASTA (ccds) for
pF1KE1444
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1444, 274 aa
1>>>pF1KE1444 274 - 274 aa - 274 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4207+/-0.000896; mu= 13.9879+/- 0.054
mean_var=62.5323+/-12.599, 0's: 0 Z-trim(104.7): 20 B-trim: 0 in 0/51
Lambda= 0.162189
statistics sampled from 8012 (8024) to 8012 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.246), width: 16
Scan time: 2.290
The best scores are: opt bits E(32554)
CCDS10883.1 NQO1 gene_id:1728|Hs108|chr16 ( 274) 1833 437.6 4.7e-123
CCDS32471.1 NQO1 gene_id:1728|Hs108|chr16 ( 236) 933 226.9 1e-59
CCDS32472.1 NQO1 gene_id:1728|Hs108|chr16 ( 240) 926 225.3 3.2e-59
CCDS4481.1 NQO2 gene_id:4835|Hs108|chr6 ( 231) 736 180.8 7.5e-46
CCDS67067.1 NQO1 gene_id:1728|Hs108|chr16 ( 202) 696 171.5 4.4e-43
CCDS75388.1 NQO2 gene_id:4835|Hs108|chr6 ( 193) 309 80.9 7.6e-16
>>CCDS10883.1 NQO1 gene_id:1728|Hs108|chr16 (274 aa)
initn: 1833 init1: 1833 opt: 1833 Z-score: 2322.7 bits: 437.6 E(32554): 4.7e-123
Smith-Waterman score: 1833; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)
10 20 30 40 50 60
pF1KE1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
190 200 210 220 230 240
250 260 270
pF1KE1 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
::::::::::::::::::::::::::::::::::
CCDS10 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
250 260 270
>>CCDS32471.1 NQO1 gene_id:1728|Hs108|chr16 (236 aa)
initn: 921 init1: 921 opt: 933 Z-score: 1185.6 bits: 226.9 E(32554): 1e-59
Smith-Waterman score: 1468; 86.1% identity (86.1% similar) in 274 aa overlap (1-274:1-236)
10 20 30 40 50 60
pF1KE1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
:::::::::::::::::::::::::::::::::::::::::
CCDS32 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQ-------------------
70 80 90 100
130 140 150 160 170 180
pF1KE1 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
:::::::::::::::::::::::::::::::::::::::::
CCDS32 -------------------SKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
110 120 130 140
190 200 210 220 230 240
pF1KE1 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
150 160 170 180 190 200
250 260 270
pF1KE1 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
::::::::::::::::::::::::::::::::::
CCDS32 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
210 220 230
>>CCDS32472.1 NQO1 gene_id:1728|Hs108|chr16 (240 aa)
initn: 926 init1: 926 opt: 926 Z-score: 1176.7 bits: 225.3 E(32554): 3.2e-59
Smith-Waterman score: 1532; 87.6% identity (87.6% similar) in 274 aa overlap (1-274:1-240)
10 20 30 40 50 60
pF1KE1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
:::::::::::::::::::: ::::::
CCDS32 FIGEFAYTYAAMYDKGPFRS----------------------------------GILHFC
130 140
190 200 210 220 230 240
pF1KE1 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
150 160 170 180 190 200
250 260 270
pF1KE1 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
::::::::::::::::::::::::::::::::::
CCDS32 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
210 220 230 240
>>CCDS4481.1 NQO2 gene_id:4835|Hs108|chr6 (231 aa)
initn: 740 init1: 715 opt: 736 Z-score: 936.7 bits: 180.8 E(32554): 7.5e-46
Smith-Waterman score: 736; 48.4% identity (76.5% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
:.:...::: ::.: ::: ..:..:. :...: :. :::::::..: . ::::: :
CCDS44 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
..: :.: .:. :::. :. ::. ::::.. :::::::::: ::.::::::::..::
CCDS44 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
. ::. ..::.: ...: :.::.::::.. ::. :..:: .:::.: : ::::
CCDS44 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
::.:: ::.... . . : .. .:..::..:: : :.
CCDS44 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
190 200 210 220 230
250 260 270
pF1KE1 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
>>CCDS67067.1 NQO1 gene_id:1728|Hs108|chr16 (202 aa)
initn: 696 init1: 696 opt: 696 Z-score: 887.0 bits: 171.5 E(32554): 4.4e-43
Smith-Waterman score: 1177; 73.7% identity (73.7% similar) in 274 aa overlap (1-274:1-202)
10 20 30 40 50 60
pF1KE1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
:::::::::::::::::::::::::::::::::::::::::
CCDS67 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQ-------------------
70 80 90 100
130 140 150 160 170 180
pF1KE1 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
:::::::
CCDS67 -----------------------------------------------------SGILHFC
190 200 210 220 230 240
pF1KE1 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
110 120 130 140 150 160
250 260 270
pF1KE1 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
::::::::::::::::::::::::::::::::::
CCDS67 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
170 180 190 200
>>CCDS75388.1 NQO2 gene_id:4835|Hs108|chr6 (193 aa)
initn: 565 init1: 306 opt: 309 Z-score: 397.9 bits: 80.9 E(32554): 7.6e-16
Smith-Waterman score: 502; 39.4% identity (62.9% similar) in 221 aa overlap (1-221:1-183)
10 20 30 40 50 60
pF1KE1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
:.:...::: ::.: ::: ..:..:. :...: :. :::::::..: . ::::: :
CCDS75 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
..: :.: .:. :::. :. ::. ::::.. :::::::
CCDS75 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQ-------------------
70 80 90 100
130 140 150 160 170 180
pF1KE1 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
.: :.::.::::.. ::. :..:: .:::.: : ::::
CCDS75 -------------------GKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
110 120 130 140
190 200 210 220 230 240
pF1KE1 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
::.:: ::.... . . : .. .:..::..:: : :.
CCDS75 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
150 160 170 180 190
250 260 270
pF1KE1 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
274 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:12:25 2016 done: Mon Nov 7 02:12:25 2016
Total Scan time: 2.290 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]