FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1098, 315 aa
  1>>>pF1KE1098 315 - 315 aa - 315 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3631+/-0.000415; mu= 10.3253+/- 0.026
 mean_var=78.7141+/-16.069, 0's: 0 Z-trim(110.5): 68  B-trim: 50 in 1/52
 Lambda= 0.144560
 statistics sampled from 18819 (18878) to 18819 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.221), width:  16
 Scan time:  6.190

The best scores are:                                      opt bits E(85289)
NP_004085 (OMIM: 603907) eukaryotic translation in ( 315) 2020 431.1 1.4e-120


>>NP_004085 (OMIM: 603907) eukaryotic translation initia  (315 aa)
 initn: 2020 init1: 2020 opt: 2020  Z-score: 2285.7  bits: 431.1 E(85289): 1.4e-120
Smith-Waterman score: 2020; 100.0% identity (100.0% similar) in 315 aa overlap (1-315:1-315)

               10        20        30        40        50        60
pF1KE1 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLERENAEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLERENAEV
              250       260       270       280       290       300

              310     
pF1KE1 DGDDDAEEMEAKAED
       :::::::::::::::
NP_004 DGDDDAEEMEAKAED
              310     




315 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:12:17 2016 done: Sat Nov  5 19:12:18 2016
 Total Scan time:  6.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]