FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1098, 315 aa
  1>>>pF1KE1098 315 - 315 aa - 315 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0849+/-0.000991; mu= 11.7540+/- 0.059
 mean_var=69.4970+/-13.622, 0's: 0 Z-trim(103.7): 28  B-trim: 0 in 0/50
 Lambda= 0.153848
 statistics sampled from 7512 (7516) to 7512 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.231), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS9781.1 EIF2S1 gene_id:1965|Hs108|chr14         ( 315) 2020 457.5 6.1e-129


>>CCDS9781.1 EIF2S1 gene_id:1965|Hs108|chr14              (315 aa)
 initn: 2020 init1: 2020 opt: 2020  Z-score: 2428.4  bits: 457.5 E(32554): 6.1e-129
Smith-Waterman score: 2020; 100.0% identity (100.0% similar) in 315 aa overlap (1-315:1-315)

               10        20        30        40        50        60
pF1KE1 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLERENAEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 TLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLERENAEV
              250       260       270       280       290       300

              310     
pF1KE1 DGDDDAEEMEAKAED
       :::::::::::::::
CCDS97 DGDDDAEEMEAKAED
              310     




315 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:12:16 2016 done: Sat Nov  5 19:12:17 2016
 Total Scan time:  2.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]