FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1084, 212 aa
  1>>>pF1KE1084 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9667+/-0.000659; mu= 11.5135+/- 0.040
 mean_var=79.4316+/-15.708, 0's: 0 Z-trim(111.8): 7  B-trim: 0 in 0/52
 Lambda= 0.143906
 statistics sampled from 12653 (12658) to 12653 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.389), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS5375.1 IL6 gene_id:3569|Hs108|chr7             ( 212) 1364 291.8 2.1e-79
CCDS83166.1 IL6 gene_id:3569|Hs108|chr7            ( 136)  865 188.1 2.2e-48


>>CCDS5375.1 IL6 gene_id:3569|Hs108|chr7                  (212 aa)
 initn: 1364 init1: 1364 opt: 1364  Z-score: 1539.0  bits: 291.8 E(32554): 2.1e-79
Smith-Waterman score: 1364; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KE1 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ
              130       140       150       160       170       180

              190       200       210  
pF1KE1 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
       ::::::::::::::::::::::::::::::::
CCDS53 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
              190       200       210  

>>CCDS83166.1 IL6 gene_id:3569|Hs108|chr7                 (136 aa)
 initn: 865 init1: 865 opt: 865  Z-score: 982.1  bits: 188.1 E(32554): 2.2e-48
Smith-Waterman score: 865; 100.0% identity (100.0% similar) in 136 aa overlap (77-212:1-136)

         50        60        70        80        90       100      
pF1KE1 LTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGF
                                     ::::::::::::::::::::::::::::::
CCDS83                               MCESSKEALAENNLNLPKMAEKDGCFQSGF
                                             10        20        30

        110       120       130       140       150       160      
pF1KE1 NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITT
               40        50        60        70        80        90

        170       180       190       200       210  
pF1KE1 PDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
              100       110       120       130      




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 09:09:07 2016 done: Sat Nov  5 09:09:07 2016
 Total Scan time:  1.950 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]