FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1077, 228 aa
  1>>>pF1KE1077 228 - 228 aa - 228 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9269+/-0.000965; mu= 7.9600+/- 0.057
 mean_var=215.8712+/-47.686, 0's: 0 Z-trim(112.2): 82  B-trim: 0 in 0/51
 Lambda= 0.087292
 statistics sampled from 12902 (12975) to 12902 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.399), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS33482.1 RNF114 gene_id:55905|Hs108|chr20       ( 228) 1633 217.7 4.8e-57
CCDS10969.1 RNF166 gene_id:115992|Hs108|chr16      ( 237)  752 106.8 1.2e-23
CCDS54056.1 RNF166 gene_id:115992|Hs108|chr16      ( 128)  457 69.3 1.3e-12
CCDS54057.1 RNF166 gene_id:115992|Hs108|chr16      ( 156)  430 66.0 1.5e-11


>>CCDS33482.1 RNF114 gene_id:55905|Hs108|chr20            (228 aa)
 initn: 1633 init1: 1633 opt: 1633  Z-score: 1137.6  bits: 217.7 E(32554): 4.8e-57
Smith-Waterman score: 1633; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)

               10        20        30        40        50        60
pF1KE1 MAAQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAAQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP
              130       140       150       160       170       180

              190       200       210       220        
pF1KE1 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ
              190       200       210       220        

>>CCDS10969.1 RNF166 gene_id:115992|Hs108|chr16           (237 aa)
 initn: 616 init1: 410 opt: 752  Z-score: 537.8  bits: 106.8 E(32554): 1.2e-23
Smith-Waterman score: 752; 45.2% identity (71.7% similar) in 230 aa overlap (2-225:10-234)

                       10        20         30        40         50
pF1KE1         MAAQQRDCGGAAQLAGPAAEADPL-GRFTCPVCLEVYEKPVQV-PCGHVFCS
                .::::.       ::::.  . : ...:::.:::::..:: .  :::.::.
CCDS10 MAMFRSLVASAQQRQ-----PPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCG
               10             20        30        40        50     

               60        70          80        90       100        
pF1KE1 ACLQECLKPKKPVCGVCRSALAPGV--RAVELERQIESTETSCHGCRKNFFLSKIRSHVA
        ::: ::.  .:.: .::  . :    .:...:.:. : .. :.:: :.  :.:.: :..
CCDS10 ECLQPCLQVPSPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHIS
          60        70        80        90       100       110     

      110       120         130       140       150       160      
pF1KE1 TCSKYQNYIMEGVK--ATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHST
       .: : :. . .  :   ..  ..  : :.::: :: ::::  .:.::. ::.::   : .
CCDS10 SCLKVQEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRS
         120       130       140       150       160       170     

        170       180       190       200       210       220      
pF1KE1 DTKSVVCPICASMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSII
       : . ::::::..::::::.:.:::: .:. .::.:::::::::..:::  .. .:  :. 
CCDS10 DPNRVVCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLS
         180       190       200       210       220       230     

         
pF1KE1 DQ
         
CCDS10 EN
         

>>CCDS54056.1 RNF166 gene_id:115992|Hs108|chr16           (128 aa)
 initn: 432 init1: 410 opt: 457  Z-score: 339.9  bits: 69.3 E(32554): 1.3e-12
Smith-Waterman score: 457; 48.0% identity (73.6% similar) in 125 aa overlap (103-225:1-125)

             80        90       100       110       120         130
pF1KE1 PGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVK--ATIKDASL
                                     .: :...: : :. . .  :   ..  .. 
CCDS54                               MRVHISSCLKVQEQMANCPKFVPVVPTSQP
                                             10        20        30

              140       150       160       170       180       190
pF1KE1 QPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMPWGDPNYRSAN
        : :.::: :: ::::  .:.::. ::.::   : .: . ::::::..::::::.:.:::
CCDS54 IPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKSAN
               40        50        60        70        80        90

              200       210       220        
pF1KE1 FREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ
       : .:. .::.:::::::::..:::  .. .:  :.   
CCDS54 FLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN
              100       110       120        

>>CCDS54057.1 RNF166 gene_id:115992|Hs108|chr16           (156 aa)
 initn: 506 init1: 410 opt: 430  Z-score: 320.6  bits: 66.0 E(32554): 1.5e-11
Smith-Waterman score: 430; 57.4% identity (79.8% similar) in 94 aa overlap (132-225:60-153)

             110       120       130       140       150       160 
pF1KE1 KIRSHVATCSKYQNYIMEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCK
                                     : :.::: :: ::::  .:.::. ::.:: 
CCDS54 QYTCPICLEVQEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHCV
      30        40        50        60        70        80         

             170       180       190       200       210       220 
pF1KE1 LFHSTDTKSVVCPICASMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVL
         : .: . ::::::..::::::.:.:::: .:. .::.:::::::::..:::  .. .:
CCDS54 ESHRSDPNRVVCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAAL
      90       100       110       120       130       140         

              
pF1KE1 QRSIIDQ
         :.   
CCDS54 ALSLSEN
     150      




228 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:34:05 2016 done: Sat Nov  5 19:34:05 2016
 Total Scan time:  1.920 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]