FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1076, 296 aa
  1>>>pF1KE1076 296 - 296 aa - 296 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0830+/-0.000813; mu= 16.0684+/- 0.049
 mean_var=58.0171+/-11.650, 0's: 0 Z-trim(105.8): 32  B-trim: 452 in 1/53
 Lambda= 0.168382
 statistics sampled from 8587 (8613) to 8587 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.265), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS7967.1 TMX2 gene_id:51075|Hs108|chr11          ( 296) 1978 488.7 2.1e-138
CCDS44601.1 TMX2 gene_id:51075|Hs108|chr11         ( 258) 1172 292.9 1.7e-79


>>CCDS7967.1 TMX2 gene_id:51075|Hs108|chr11               (296 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 2598.2  bits: 488.7 E(32554): 2.1e-138
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)

               10        20        30        40        50        60
pF1KE1 MAVLAPLIALVYSVPRLSRWLAQPYYLLSALLSAAFLLVRKLPPLCHGLPTQREDGNPCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MAVLAPLIALVYSVPRLSRWLAQPYYLLSALLSAAFLLVRKLPPLCHGLPTQREDGNPCD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FDWREVEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANTILFFRLDIRMGLLYITLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 FDWREVEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANTILFFRLDIRMGLLYITLC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IVFLMTCKPPLYMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 IVFLMTCKPPLYMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 SLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGR
              190       200       210       220       230       240

              250       260       270       280       290      
pF1KE1 AVSWTFSEENVIREFNLNELYQRAKKLSKAGDNIPEEQPVASTPTTVSDGENKKDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 AVSWTFSEENVIREFNLNELYQRAKKLSKAGDNIPEEQPVASTPTTVSDGENKKDK
              250       260       270       280       290      

>>CCDS44601.1 TMX2 gene_id:51075|Hs108|chr11              (258 aa)
 initn: 1172 init1: 1172 opt: 1172  Z-score: 1540.9  bits: 292.9 E(32554): 1.7e-79
Smith-Waterman score: 1646; 86.8% identity (87.2% similar) in 296 aa overlap (1-296:1-258)

               10        20        30        40        50        60
pF1KE1 MAVLAPLIALVYSVPRLSRWLAQPYYLLSALLSAAFLLVRKLPPLCHGLPTQREDGNPCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAVLAPLIALVYSVPRLSRWLAQPYYLLSALLSAAFLLVRKLPPLCHGLPTQREDGNPCD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FDWREVEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANTILFFRLDIRMGLLYITLC
       :::::::::::::::::::::::.                                    
CCDS44 FDWREVEILMFLSAIVMMKNRRSM------------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KE1 IVFLMTCKPPLYMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADL
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 --FLMTCKPPLYMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADL
             90       100       110       120       130       140  

              190       200       210       220       230       240
pF1KE1 SLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGR
            150       160       170       180       190       200  

              250       260       270       280       290      
pF1KE1 AVSWTFSEENVIREFNLNELYQRAKKLSKAGDNIPEEQPVASTPTTVSDGENKKDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AVSWTFSEENVIREFNLNELYQRAKKLSKAGDNIPEEQPVASTPTTVSDGENKKDK
            210       220       230       240       250        




296 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:33:36 2016 done: Sat Nov  5 19:33:36 2016
 Total Scan time:  2.450 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]