FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1066, 492 aa
  1>>>pF1KE1066 492 - 492 aa - 492 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0193+/-0.000863; mu= 10.4176+/- 0.052
 mean_var=119.8147+/-23.778, 0's: 0 Z-trim(110.3): 15  B-trim: 80 in 1/48
 Lambda= 0.117171
 statistics sampled from 11536 (11542) to 11536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.355), width:  16
 Scan time:  3.560

The best scores are:                                      opt bits E(32554)
CCDS32087.1 ATG14 gene_id:22863|Hs108|chr14        ( 492) 3274 564.5  9e-161


>>CCDS32087.1 ATG14 gene_id:22863|Hs108|chr14             (492 aa)
 initn: 3274 init1: 3274 opt: 3274  Z-score: 2999.9  bits: 564.5 E(32554): 9e-161
Smith-Waterman score: 3274; 100.0% identity (100.0% similar) in 492 aa overlap (1-492:1-492)

               10        20        30        40        50        60
pF1KE1 MASPSGKGARALEAPGCGPRPLARDLVDSVDDAEGLYVAVERCPLCNTTRRRLTCAKCVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MASPSGKGARALEAPGCGPRPLARDLVDSVDDAEGLYVAVERCPLCNTTRRRLTCAKCVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SGDFVYFDGRDRERFIDKKERLSRLKSKQEEFQKEVLKAMEGKWITDQLRWKIMSCKMRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SGDFVYFDGRDRERFIDKKERLSRLKSKQEEFQKEVLKAMEGKWITDQLRWKIMSCKMRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 IDLRSHYERLANLRRSHILELTSVIFPIEEVKTGVRDPADVSSESDSAMTSSTVSKLAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IDLRSHYERLANLRRSHILELTSVIFPIEEVKTGVRDPADVSSESDSAMTSSTVSKLAEA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RRTTYLSGRWVCDDHNGDTSISITGPWISLPNNGDYSAYYSWVEEKKTTQGPDMEQSNPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RRTTYLSGRWVCDDHNGDTSISITGPWISLPNNGDYSAYYSWVEEKKTTQGPDMEQSNPA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 YTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 SQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 DERVSDEETDLGTDWENLPSPRFCDIPSQSVEVSQSQSTQASPPIASSSAGGMISSAAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DERVSDEETDLGTDWENLPSPRFCDIPSQSVEVSQSQSTQASPPIASSSAGGMISSAAAS
              430       440       450       460       470       480

              490  
pF1KE1 VTSWFKAYTGHR
       ::::::::::::
CCDS32 VTSWFKAYTGHR
              490  




492 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:12:50 2016 done: Sat Nov  5 20:12:50 2016
 Total Scan time:  3.560 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]