FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1061, 299 aa
  1>>>pF1KE1061 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6990+/-0.000347; mu= 14.1985+/- 0.022
 mean_var=78.6952+/-16.042, 0's: 0 Z-trim(115.8): 2  B-trim: 990 in 1/54
 Lambda= 0.144577
 statistics sampled from 26429 (26430) to 26429 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.31), width:  16
 Scan time:  6.930

The best scores are:                                      opt bits E(85289)
NP_079058 (OMIM: 611290,611291) non-homologous end ( 299) 1988 423.9 1.9e-118


>>NP_079058 (OMIM: 611290,611291) non-homologous end-joi  (299 aa)
 initn: 1988 init1: 1988 opt: 1988  Z-score: 2247.5  bits: 423.9 E(85289): 1.9e-118
Smith-Waterman score: 1988; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KE1 MEELEQGLLMQPWAWLQLAENSLLAKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MEELEQGLLMQPWAWLQLAENSLLAKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LNKRLTAPPAAFLCHLDNLLRPLLKDAAHPSEATFSCDCVADALILRVRSELSGLPFYWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LNKRLTAPPAAFLCHLDNLLRPLLKDAAHPSEATFSCDCVADALILRVRSELSGLPFYWN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FHCMLASPSLVSQHLIRPLMGMSLALQCQVRELATLLHMKDLEIQDYQESGATLIRDRLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 FHCMLASPSLVSQHLIRPLMGMSLALQCQVRELATLLHMKDLEIQDYQESGATLIRDRLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TEPFEENSFLEQFMIEKLPEACSIGDGKPFVMNLQDLYMAVTTQEVQVGQKHQGAGDPHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 TEPFEENSFLEQFMIEKLPEACSIGDGKPFVMNLQDLYMAVTTQEVQVGQKHQGAGDPHT
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KE1 SNSASLQGIDSQCVNQPEQLVSSAPTLSAPEKESTGTSGPLQRPQLSKVKRKKPRGLFS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 SNSASLQGIDSQCVNQPEQLVSSAPTLSAPEKESTGTSGPLQRPQLSKVKRKKPRGLFS
              250       260       270       280       290         




299 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:14:15 2016 done: Mon Nov  7 03:14:16 2016
 Total Scan time:  6.930 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]