FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1061, 299 aa
  1>>>pF1KE1061 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9101+/-0.000804; mu= 13.0106+/- 0.048
 mean_var=78.1059+/-15.422, 0's: 0 Z-trim(108.5): 7  B-trim: 0 in 0/51
 Lambda= 0.145122
 statistics sampled from 10283 (10285) to 10283 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.316), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS2432.1 NHEJ1 gene_id:79840|Hs108|chr2          ( 299) 1988 425.4 2.6e-119


>>CCDS2432.1 NHEJ1 gene_id:79840|Hs108|chr2               (299 aa)
 initn: 1988 init1: 1988 opt: 1988  Z-score: 2255.6  bits: 425.4 E(32554): 2.6e-119
Smith-Waterman score: 1988; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KE1 MEELEQGLLMQPWAWLQLAENSLLAKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MEELEQGLLMQPWAWLQLAENSLLAKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LNKRLTAPPAAFLCHLDNLLRPLLKDAAHPSEATFSCDCVADALILRVRSELSGLPFYWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LNKRLTAPPAAFLCHLDNLLRPLLKDAAHPSEATFSCDCVADALILRVRSELSGLPFYWN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FHCMLASPSLVSQHLIRPLMGMSLALQCQVRELATLLHMKDLEIQDYQESGATLIRDRLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 FHCMLASPSLVSQHLIRPLMGMSLALQCQVRELATLLHMKDLEIQDYQESGATLIRDRLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TEPFEENSFLEQFMIEKLPEACSIGDGKPFVMNLQDLYMAVTTQEVQVGQKHQGAGDPHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 TEPFEENSFLEQFMIEKLPEACSIGDGKPFVMNLQDLYMAVTTQEVQVGQKHQGAGDPHT
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KE1 SNSASLQGIDSQCVNQPEQLVSSAPTLSAPEKESTGTSGPLQRPQLSKVKRKKPRGLFS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 SNSASLQGIDSQCVNQPEQLVSSAPTLSAPEKESTGTSGPLQRPQLSKVKRKKPRGLFS
              250       260       270       280       290         




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:14:14 2016 done: Mon Nov  7 03:14:14 2016
 Total Scan time:  2.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]