Result of FASTA (ccds) for
pF1KE1052
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1052, 375 aa
1>>>pF1KE1052 375 - 375 aa - 375 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3005+/-0.000897; mu= 11.8779+/- 0.054
mean_var=91.7667+/-17.990, 0's: 0 Z-trim(106.7): 41 B-trim: 0 in 0/54
Lambda= 0.133885
statistics sampled from 9129 (9157) to 9129 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.281), width: 16
Scan time: 2.710
The best scores are: opt bits E(32554)
CCDS6003.1 PDGFRL gene_id:5157|Hs108|chr8 ( 375) 2501 493.3 1.4e-139
CCDS53861.1 FLT1 gene_id:2321|Hs108|chr13 ( 541) 347 77.4 3.4e-14
CCDS73556.1 FLT1 gene_id:2321|Hs108|chr13 ( 687) 347 77.4 4.2e-14
CCDS53860.1 FLT1 gene_id:2321|Hs108|chr13 ( 733) 347 77.4 4.4e-14
CCDS9330.1 FLT1 gene_id:2321|Hs108|chr13 (1338) 347 77.6 7.3e-14
>>CCDS6003.1 PDGFRL gene_id:5157|Hs108|chr8 (375 aa)
initn: 2501 init1: 2501 opt: 2501 Z-score: 2619.3 bits: 493.3 E(32554): 1.4e-139
Smith-Waterman score: 2501; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)
10 20 30 40 50 60
pF1KE1 MKVWLLLGLLLVHEALEDVTGQHLPKNKRPKEPGENRIKPTNKKVKPKIPKMKDRDSANS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MKVWLLLGLLLVHEALEDVTGQHLPKNKRPKEPGENRIKPTNKKVKPKIPKMKDRDSANS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 APKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIGWSYPAYLDTFKDSRLSVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 APKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIGWSYPAYLDTFKDSRLSVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 QNERYGQLTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFFTEKGELFVPSPSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QNERYGQLTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFFTEKGELFVPSPSY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FDVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYDMKRGFVYLQPHSEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FDVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYDMKRGFVYLQPHSEH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 QGVVYCRAEAGGRSQISVKYQLLYVAVPSGPPSTTILASSNKVKSGDDISVLCTVLGEPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QGVVYCRAEAGGRSQISVKYQLLYVAVPSGPPSTTILASSNKVKSGDDISVLCTVLGEPD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 VEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVITVEDFETIDAGYYICTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVITVEDFETIDAGYYICTAQ
310 320 330 340 350 360
370
pF1KE1 NLQGQTTVATTVEFS
:::::::::::::::
CCDS60 NLQGQTTVATTVEFS
370
>>CCDS53861.1 FLT1 gene_id:2321|Hs108|chr13 (541 aa)
initn: 267 init1: 80 opt: 347 Z-score: 368.3 bits: 77.4 E(32554): 3.4e-14
Smith-Waterman score: 347; 26.0% identity (58.7% similar) in 300 aa overlap (86-372:43-326)
60 70 80 90 100 110
pF1KE1 DSANSAPKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIG-WSYPAYLDTFKD
. ::::..:.:.: :: : ... ..
CCDS53 ALLSCLLLTGSSSGSKLKDPELSLKGTQHIMQAGQTLHLQCRGEAAHKWSLPEMVSK-ES
20 30 40 50 60 70
120 130 140 150 160
pF1KE1 SRLSVKQNE--RYGQ-----LTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFF
:::. .. : :. ::: .. . :: .:: . . .: :... . :::.
CCDS53 ERLSITKSACGRNGKQFCSTLTLNTAQANHTGFYSC--KYLAVPTSKKKETES-AIYIFI
80 90 100 110 120
170 180 190 200 210 220
pF1KE1 TEKGELFVPSPSYF-DVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYD
.. :. :: : . ...... :. :.::::: . ::: ..:: . .: :..:
CCDS53 SDTGRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTL-KKFPLDTLIPDGKRIIWD
130 140 150 160 170 180
230 240 250 260 270 280
pF1KE1 MKRGFVYLQPHSEHQGVVYCRAEAGGR----SQISVKYQLLYVAVPSGPPSTTILASSNK
..::. . .. :.. :.: ..:. . .. . . : . : . :
CCDS53 SRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLTHRQTNTIIDVQISTPRPV------K
190 200 210 220 230 240
290 300 310 320 330 340
pF1KE1 VKSGDDISVLCTVLGEPDVEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVI
. : . . ::. ...:..:: .: .:..: .... : : .. .:.. : ::.
CCDS53 LLRGHTLVLNCTATTPLNTRVQMTWSYPDEKNKR-ASVR---RRIDQSNSHAN-IFYSVL
250 260 270 280 290
350 360 370
pF1KE1 TVEDFETIDAGYYICTAQNLQGQTTVATTVEFS
:.. ... : : : : ... . .: :.:
CCDS53 TIDKMQNKDKGLYTCRVRSGPSFKSVNTSVHIYDKAFITVKHRKQQVLETVAGKRSYRLS
300 310 320 330 340 350
>>CCDS73556.1 FLT1 gene_id:2321|Hs108|chr13 (687 aa)
initn: 267 init1: 80 opt: 347 Z-score: 366.8 bits: 77.4 E(32554): 4.2e-14
Smith-Waterman score: 347; 26.0% identity (58.7% similar) in 300 aa overlap (86-372:43-326)
60 70 80 90 100 110
pF1KE1 DSANSAPKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIG-WSYPAYLDTFKD
. ::::..:.:.: :: : ... ..
CCDS73 ALLSCLLLTGSSSGSKLKDPELSLKGTQHIMQAGQTLHLQCRGEAAHKWSLPEMVSK-ES
20 30 40 50 60 70
120 130 140 150 160
pF1KE1 SRLSVKQNE--RYGQ-----LTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFF
:::. .. : :. ::: .. . :: .:: . . .: :... . :::.
CCDS73 ERLSITKSACGRNGKQFCSTLTLNTAQANHTGFYSC--KYLAVPTSKKKETES-AIYIFI
80 90 100 110 120
170 180 190 200 210 220
pF1KE1 TEKGELFVPSPSYF-DVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYD
.. :. :: : . ...... :. :.::::: . ::: ..:: . .: :..:
CCDS73 SDTGRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTL-KKFPLDTLIPDGKRIIWD
130 140 150 160 170 180
230 240 250 260 270 280
pF1KE1 MKRGFVYLQPHSEHQGVVYCRAEAGGR----SQISVKYQLLYVAVPSGPPSTTILASSNK
..::. . .. :.. :.: ..:. . .. . . : . : . :
CCDS73 SRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLTHRQTNTIIDVQISTPRPV------K
190 200 210 220 230 240
290 300 310 320 330 340
pF1KE1 VKSGDDISVLCTVLGEPDVEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVI
. : . . ::. ...:..:: .: .:..: .... : : .. .:.. : ::.
CCDS73 LLRGHTLVLNCTATTPLNTRVQMTWSYPDEKNKR-ASVR---RRIDQSNSHAN-IFYSVL
250 260 270 280 290
350 360 370
pF1KE1 TVEDFETIDAGYYICTAQNLQGQTTVATTVEFS
:.. ... : : : : ... . .: :.:
CCDS73 TIDKMQNKDKGLYTCRVRSGPSFKSVNTSVHIYDKAFITVKHRKQQVLETVAGKRSYRLS
300 310 320 330 340 350
>>CCDS53860.1 FLT1 gene_id:2321|Hs108|chr13 (733 aa)
initn: 267 init1: 80 opt: 347 Z-score: 366.3 bits: 77.4 E(32554): 4.4e-14
Smith-Waterman score: 347; 26.0% identity (58.7% similar) in 300 aa overlap (86-372:43-326)
60 70 80 90 100 110
pF1KE1 DSANSAPKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIG-WSYPAYLDTFKD
. ::::..:.:.: :: : ... ..
CCDS53 ALLSCLLLTGSSSGSKLKDPELSLKGTQHIMQAGQTLHLQCRGEAAHKWSLPEMVSK-ES
20 30 40 50 60 70
120 130 140 150 160
pF1KE1 SRLSVKQNE--RYGQ-----LTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFF
:::. .. : :. ::: .. . :: .:: . . .: :... . :::.
CCDS53 ERLSITKSACGRNGKQFCSTLTLNTAQANHTGFYSC--KYLAVPTSKKKETES-AIYIFI
80 90 100 110 120
170 180 190 200 210 220
pF1KE1 TEKGELFVPSPSYF-DVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYD
.. :. :: : . ...... :. :.::::: . ::: ..:: . .: :..:
CCDS53 SDTGRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTL-KKFPLDTLIPDGKRIIWD
130 140 150 160 170 180
230 240 250 260 270 280
pF1KE1 MKRGFVYLQPHSEHQGVVYCRAEAGGR----SQISVKYQLLYVAVPSGPPSTTILASSNK
..::. . .. :.. :.: ..:. . .. . . : . : . :
CCDS53 SRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLTHRQTNTIIDVQISTPRPV------K
190 200 210 220 230 240
290 300 310 320 330 340
pF1KE1 VKSGDDISVLCTVLGEPDVEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVI
. : . . ::. ...:..:: .: .:..: .... : : .. .:.. : ::.
CCDS53 LLRGHTLVLNCTATTPLNTRVQMTWSYPDEKNKR-ASVR---RRIDQSNSHAN-IFYSVL
250 260 270 280 290
350 360 370
pF1KE1 TVEDFETIDAGYYICTAQNLQGQTTVATTVEFS
:.. ... : : : : ... . .: :.:
CCDS53 TIDKMQNKDKGLYTCRVRSGPSFKSVNTSVHIYDKAFITVKHRKQQVLETVAGKRSYRLS
300 310 320 330 340 350
>>CCDS9330.1 FLT1 gene_id:2321|Hs108|chr13 (1338 aa)
initn: 267 init1: 80 opt: 347 Z-score: 362.4 bits: 77.6 E(32554): 7.3e-14
Smith-Waterman score: 347; 26.0% identity (58.7% similar) in 300 aa overlap (86-372:43-326)
60 70 80 90 100 110
pF1KE1 DSANSAPKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIG-WSYPAYLDTFKD
. ::::..:.:.: :: : ... ..
CCDS93 ALLSCLLLTGSSSGSKLKDPELSLKGTQHIMQAGQTLHLQCRGEAAHKWSLPEMVSK-ES
20 30 40 50 60 70
120 130 140 150 160
pF1KE1 SRLSVKQNE--RYGQ-----LTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFF
:::. .. : :. ::: .. . :: .:: . . .: :... . :::.
CCDS93 ERLSITKSACGRNGKQFCSTLTLNTAQANHTGFYSC--KYLAVPTSKKKETES-AIYIFI
80 90 100 110 120
170 180 190 200 210 220
pF1KE1 TEKGELFVPSPSYF-DVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYD
.. :. :: : . ...... :. :.::::: . ::: ..:: . .: :..:
CCDS93 SDTGRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTL-KKFPLDTLIPDGKRIIWD
130 140 150 160 170 180
230 240 250 260 270 280
pF1KE1 MKRGFVYLQPHSEHQGVVYCRAEAGGR----SQISVKYQLLYVAVPSGPPSTTILASSNK
..::. . .. :.. :.: ..:. . .. . . : . : . :
CCDS93 SRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLTHRQTNTIIDVQISTPRPV------K
190 200 210 220 230 240
290 300 310 320 330 340
pF1KE1 VKSGDDISVLCTVLGEPDVEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVI
. : . . ::. ...:..:: .: .:..: .... : : .. .:.. : ::.
CCDS93 LLRGHTLVLNCTATTPLNTRVQMTWSYPDEKNKR-ASVR---RRIDQSNSHAN-IFYSVL
250 260 270 280 290
350 360 370
pF1KE1 TVEDFETIDAGYYICTAQNLQGQTTVATTVEFS
:.. ... : : : : ... . .: :.:
CCDS93 TIDKMQNKDKGLYTCRVRSGPSFKSVNTSVHIYDKAFITVKHRKQQVLETVAGKRSYRLS
300 310 320 330 340 350
375 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:49:47 2016 done: Sat Nov 5 07:49:48 2016
Total Scan time: 2.710 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]