FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1044, 582 aa
  1>>>pF1KE1044 582 - 582 aa - 582 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8108+/-0.000884; mu= 3.2754+/- 0.053
 mean_var=184.3020+/-41.216, 0's: 0 Z-trim(113.2): 18  B-trim: 700 in 1/50
 Lambda= 0.094473
 statistics sampled from 13869 (13884) to 13869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.426), width:  16
 Scan time:  4.040

The best scores are:                                      opt bits E(32554)
CCDS9160.1 TRAFD1 gene_id:10906|Hs108|chr12        ( 582) 4042 563.2 3.1e-160
CCDS11080.1 XAF1 gene_id:54739|Hs108|chr17         ( 301)  423 69.8 5.4e-12


>>CCDS9160.1 TRAFD1 gene_id:10906|Hs108|chr12             (582 aa)
 initn: 4042 init1: 4042 opt: 4042  Z-score: 2990.3  bits: 563.2 E(32554): 3.1e-160
Smith-Waterman score: 4042; 100.0% identity (100.0% similar) in 582 aa overlap (1-582:1-582)

               10        20        30        40        50        60
pF1KE1 MAEFLDDQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MAEFLDDQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QVTCKCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 QVTCKCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RNVLVKDLKTHPEVCGREGEEKRNEVAIPPNAYDESWGQDGIWIASQLLRQIEALDPPMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 RNVLVKDLKTHPEVCGREGEEKRNEVAIPPNAYDESWGQDGIWIASQLLRQIEALDPPMR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LPRRPLRAFESDVFHNRTTNQRNITAQVSIQNNLFEEQERQERNRGQQPPKEGGEESANL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LPRRPLRAFESDVFHNRTTNQRNITAQVSIQNNLFEEQERQERNRGQQPPKEGGEESANL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 DFMLALSLQNEGQASSVAEQDFWRAVCEADQSHGGPRSLSDIKGAADEIMLPCEFCEELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 DFMLALSLQNEGQASSVAEQDFWRAVCEADQSHGGPRSLSDIKGAADEIMLPCEFCEELY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 PEELLIDHQTSCNPSRALPSLNTGSSSPRGVEEPDVIFQNFLQQAASNQLDSLMGLSNSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 PEELLIDHQTSCNPSRALPSLNTGSSSPRGVEEPDVIFQNFLQQAASNQLDSLMGLSNSH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 PVEESIIIPCEFCGVQLEEEVLFHHQDQCDQRPATATNHVTEGIPRLDSQPQETSPELPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 PVEESIIIPCEFCGVQLEEEVLFHHQDQCDQRPATATNHVTEGIPRLDSQPQETSPELPR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 RRVRHQGDLSSGYLDDTKQETANGPTSCLPPSRPINNMTATYNQLSRSTSGPRPGCQPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 RRVRHQGDLSSGYLDDTKQETANGPTSCLPPSRPINNMTATYNQLSRSTSGPRPGCQPSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 PCVPKLSNSDSQDIQGRNRDSQNGAIAPGHVSVIRPPQNLYPENIVPSFSPGPSGRYGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 PCVPKLSNSDSQDIQGRNRDSQNGAIAPGHVSVIRPPQNLYPENIVPSFSPGPSGRYGAS
              490       500       510       520       530       540

              550       560       570       580  
pF1KE1 GRSEGGRNSRVTPAAANYRSRTAKAKPSKQQGAGDAEEEEEE
       ::::::::::::::::::::::::::::::::::::::::::
CCDS91 GRSEGGRNSRVTPAAANYRSRTAKAKPSKQQGAGDAEEEEEE
              550       560       570       580  

>>CCDS11080.1 XAF1 gene_id:54739|Hs108|chr17              (301 aa)
 initn: 446 init1: 197 opt: 423  Z-score: 328.8  bits: 69.8 E(32554): 5.4e-12
Smith-Waterman score: 423; 40.4% identity (66.7% similar) in 141 aa overlap (12-149:7-147)

               10        20        30        40        50        60
pF1KE1 MAEFLDDQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHC
                  .: :::...   :::.:: .: : . .:: :.:: ::  :: :   :: 
CCDS11      MEGDFSVCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQ
                    10        20        30        40        50     

                70        80        90       100       110         
pF1KE1 QVTCK-CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNC
       :: :  :.....:  :. :. .::  : . :. : :.... ::. ::.:::.::::: .:
CCDS11 QVGCTMCQQSMQKSSLEFHKANECQERPVECKFCKLDMQLSKLELHESYCGSRTELCQGC
          60        70        80        90       100       110     

     120       130       140         150       160       170       
pF1KE1 GRNVLVKDLKTHPEVCGREGEE--KRNEVAIPPNAYDESWGQDGIWIASQLLRQIEALDP
       :. .. . :  : .::  :  .  : .... :                            
CCDS11 GQFIMHRMLAQHRDVCRSEQAQLGKGERISAPEREIYCHYCNQMIPENKYFHHMGKCCPD
         120       130       140       150       160       170     

       180       190       200       210       220       230       
pF1KE1 PMRLPRRPLRAFESDVFHNRTTNQRNITAQVSIQNNLFEEQERQERNRGQQPPKEGGEES
                                                                   
CCDS11 SEFKKHFPVGNPEILPSSLPSQAAENQTSTMEKDVRPKTRSINRFPLHSESSSKKAPRSK
         180       190       200       210       220       230     




582 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:45:45 2016 done: Sat Nov  5 07:45:45 2016
 Total Scan time:  4.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]