FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1043, 470 aa
  1>>>pF1KE1043 470 - 470 aa - 470 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0037+/-0.00121; mu= 1.4975+/- 0.071
 mean_var=374.1902+/-99.805, 0's: 0 Z-trim(111.0): 71  B-trim: 533 in 1/49
 Lambda= 0.066302
 statistics sampled from 12016 (12060) to 12016 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.37), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(32554)
CCDS11243.1 TRAF4 gene_id:9618|Hs108|chr17         ( 470) 3397 339.5 4.5e-93
CCDS7901.1 TRAF6 gene_id:7189|Hs108|chr11          ( 522)  641 76.0 1.1e-13


>>CCDS11243.1 TRAF4 gene_id:9618|Hs108|chr17              (470 aa)
 initn: 3397 init1: 3397 opt: 3397  Z-score: 1784.4  bits: 339.5 E(32554): 4.5e-93
Smith-Waterman score: 3397; 100.0% identity (100.0% similar) in 470 aa overlap (1-470:1-470)

               10        20        30        40        50        60
pF1KE1 MPGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 AQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 DSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQELRRELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQELRRELE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 ELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 THLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 THLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKP
              370       380       390       400       410       420

              430       440       450       460       470
pF1KE1 GTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRKILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRKILS
              430       440       450       460       470

>>CCDS7901.1 TRAF6 gene_id:7189|Hs108|chr11               (522 aa)
 initn: 711 init1: 143 opt: 641  Z-score: 359.2  bits: 76.0 E(32554): 1.1e-13
Smith-Waterman score: 746; 26.7% identity (58.0% similar) in 469 aa overlap (1-462:53-499)

                                             10        20        30
pF1KE1                               MPGFDYKFLEKPKRRLLCPLCGKPMREPVQ
                                     . :.: .:    . .  ::.:   .:: ::
CCDS79 MASSCSAVTKDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQ
             30        40        50        60        70        80  

               40        50        60        70        80        90
pF1KE1 VSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGC
        . :::::: .:. . . ..  ::: :.  :   ...::   . ..:.: ..:   .:::
CCDS79 -TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKC--PNEGC
              90       100       110       120       130           

              100       110       120       130       140       150
pF1KE1 RWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSG
         .  ::::. :   : : .. :: .:   ...  .  :. .:::.:...:. :. ... 
CCDS79 LHKMELRHLEDHQAHCEFALMDCP-QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAF
     140       150       160        170       180       190        

              160       170       180       190           200      
pF1KE1 EAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTY----CTKEFVFDT
       :  : :.  ::  .: ::  :.. ..:. . .:   .::    :::.    : ...  . 
CCDS79 EDKEIHDQNCPLANVICEY-CNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNH
      200       210        220       230       240       250       

        210       220       230       240       250       260      
pF1KE1 IQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCP-KLA
       .  :  .  .  .    : .: ...     :....  :       :...   :.   .:.
CCDS79 LARHLQENTQSHMRMLAQ-AVHSLSVIPDSGYISEVRN-------FQET--IHQLEGRLV
       260       270        280       290                300       

         270       280       290       300        310       320    
pF1KE1 MARHVEESVKPHLAMMCALVSRQRQELQELRRELEELSVGS-DGVLIWKIGSYGRRLQEA
          :  . .  ..  .   ::. .. .. :. .. :. . . .:. :::::..: .:.  
CCDS79 RQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQ
       310       320       330       340       350       360       

          330       340       350        360       370       380   
pF1KE1 KAKPNLECFSPAFYTHKYGYKLQVSAFLN-GNGSGEGTHLSLYIRVLPGAFDNLLEWPFA
       . .  .   ::.::: : :::: .   :.  ...  ....::..... : .:. : ::: 
CCDS79 EEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ
       370       380       390       400       410       420       

           390       400       410       420       430       440   
pF1KE1 RRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQ
         . ...::::.  . . .:  : .   :.   ::.:     .. ..  ::::  :.  .
CCDS79 GTIRLTILDQSEAPV-RQNH-EEIMDAKPELLAFQRP-----TIPRNPKGFGYVTFMHLE
       430       440         450       460            470       480

           450       460       470               
pF1KE1 DIRKRNYVRDDAVFIRAAVELPRKILS               
        .:.:....::....:  :                       
CCDS79 ALRQRTFIKDDTLLVRCEVSTRFDMGSLRREGFQPRSTDAGV
              490       500       510       520  




470 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:44:54 2016 done: Sat Nov  5 07:44:54 2016
 Total Scan time:  3.350 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]