Result of FASTA (ccds) for
pF1KE1037
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1037, 387 aa
1>>>pF1KE1037 387 - 387 aa - 387 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2422+/-0.000916; mu= 16.5871+/- 0.055
mean_var=58.6471+/-11.512, 0's: 0 Z-trim(104.6): 14 B-trim: 0 in 0/50
Lambda= 0.167475
statistics sampled from 7995 (7998) to 7995 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.246), width: 16
Scan time: 2.260
The best scores are: opt bits E(32554)
CCDS7862.1 BBOX1 gene_id:8424|Hs108|chr11 ( 387) 2656 650.2 8.9e-187
CCDS14768.1 TMLHE gene_id:55217|Hs108|chrX ( 421) 586 150.1 3.5e-36
CCDS55547.1 TMLHE gene_id:55217|Hs108|chrX ( 376) 431 112.6 5.9e-25
>>CCDS7862.1 BBOX1 gene_id:8424|Hs108|chr11 (387 aa)
initn: 2656 init1: 2656 opt: 2656 Z-score: 3466.7 bits: 650.2 E(32554): 8.9e-187
Smith-Waterman score: 2656; 100.0% identity (100.0% similar) in 387 aa overlap (1-387:1-387)
10 20 30 40 50 60
pF1KE1 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 NIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 DVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISR
310 320 330 340 350 360
370 380
pF1KE1 HLEGAYADWDVVMSRLRILRQRVENGN
:::::::::::::::::::::::::::
CCDS78 HLEGAYADWDVVMSRLRILRQRVENGN
370 380
>>CCDS14768.1 TMLHE gene_id:55217|Hs108|chrX (421 aa)
initn: 530 init1: 223 opt: 586 Z-score: 763.1 bits: 150.1 E(32554): 3.5e-36
Smith-Waterman score: 586; 28.3% identity (62.3% similar) in 353 aa overlap (29-379:71-417)
10 20 30 40 50
pF1KE1 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
. :::::.: ..:: .... :.: . ..
CCDS14 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
50 60 70 80 90 100
60 70 80 90 100 110
pF1KE1 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
:. : : . .:. ...:::: : .... .:: : . : . .: .... : .
CCDS14 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
110 120 130 140 150
120 130 140 150 160 170
pF1KE1 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
. :.:..: .. :. .: :.:... ::. . .. .. ::..:.... :.::
CCDS14 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
160 170 180 190 200 210
180 190 200 210 220 230
pF1KE1 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
. : . .. ...::: :. ::: ...: :.:..::.:. ::: . .:::: .
CCDS14 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
220 230 240 250 260 270
240 250 260 270 280 290
pF1KE1 QKLKKNNPQAFQILSSTFVDFTDI-GVDYCDFSVQSKHKIIELDD-KGQVVRINFNNATR
... .. :. :..::.. . : : : . . .... . .. : .:: :
CCDS14 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRYNNYDR
280 290 300 310 320 330
300 310 320 330 340 350
pF1KE1 DTIFDVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGT
.: :: . :. .:.: . .. . :..: :..:: :. .::::.::::. . .
CCDS14 AVINTVPYDVVHRWYTAHRTLTIELRRPENEFWVKLKPGRVLFIDNWRVLHGRECFTG--
340 350 360 370 380 390
360 370 380
pF1KE1 EISRHLEGAYADWDVVMSRLRILRQRVENGN
:.: : : : :.. :.:
CCDS14 --YRQLCGCYLTRDDVLNTARLLGLQA
400 410 420
>>CCDS55547.1 TMLHE gene_id:55217|Hs108|chrX (376 aa)
initn: 392 init1: 223 opt: 431 Z-score: 561.5 bits: 112.6 E(32554): 5.9e-25
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (29-253:71-293)
10 20 30 40 50
pF1KE1 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
. :::::.: ..:: .... :.: . ..
CCDS55 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
50 60 70 80 90 100
60 70 80 90 100 110
pF1KE1 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
:. : : . .:. ...:::: : .... .:: : . : . .: .... : .
CCDS55 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
110 120 130 140 150
120 130 140 150 160 170
pF1KE1 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
. :.:..: .. :. .: :.:... ::. . .. .. ::..:.... :.::
CCDS55 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
160 170 180 190 200 210
180 190 200 210 220 230
pF1KE1 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
. : . .. ...::: :. ::: ...: :.:..::.:. ::: . .:::: .
CCDS55 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
220 230 240 250 260 270
240 250 260 270 280 290
pF1KE1 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
... .. :. :..::
CCDS55 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
280 290 300 310 320 330
387 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:41:13 2016 done: Sat Nov 5 07:41:13 2016
Total Scan time: 2.260 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]