FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1036, 558 aa
  1>>>pF1KE1036 558 - 558 aa - 558 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2574+/-0.000352; mu= 18.9457+/- 0.022
 mean_var=63.5680+/-12.786, 0's: 0 Z-trim(114.0): 14  B-trim: 547 in 1/50
 Lambda= 0.160863
 statistics sampled from 23536 (23548) to 23536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.276), width:  16
 Scan time: 10.360

The best scores are:                                      opt bits E(85289)
NP_066983 (OMIM: 142620) protein ABHD16A isoform a ( 558) 3820 895.4       0
NP_001170986 (OMIM: 142620) protein ABHD16A isofor ( 525) 3250 763.1       0


>>NP_066983 (OMIM: 142620) protein ABHD16A isoform a [Ho  (558 aa)
 initn: 3820 init1: 3820 opt: 3820  Z-score: 4785.8  bits: 895.4 E(85289):    0
Smith-Waterman score: 3820; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558)

               10        20        30        40        50        60
pF1KE1 MAKLLSCVLGPRLYKIYRERDSERAPASVPETPTAVTAPHSSSWDTYYQPRALEKHADSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MAKLLSCVLGPRLYKIYRERDSERAPASVPETPTAVTAPHSSSWDTYYQPRALEKHADSI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NPQYRQFITILEATHRNQSSENKRQLANYNFDFRSWPVDFHWEEPSSRKESRGGPSRRGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 NPQYRQFITILEATHRNQSSENKRQLANYNFDFRSWPVDFHWEEPSSRKESRGGPSRRGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ALLRPEPLHRGTADTLLNRVKKLPCQITSYLVAHTLGRRMLYPGSVYLLQKALMPVLLQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 ALLRPEPLHRGTADTLLNRVKKLPCQITSYLVAHTLGRRMLYPGSVYLLQKALMPVLLQG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 QARLVEECNGRRAKLLACDGNEIDTMFVDRRGTAEPQGQKLVICCEGNAGFYEVGCVSTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 QARLVEECNGRRAKLLACDGNEIDTMFVDRRGTAEPQGQKLVICCEGNAGFYEVGCVSTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 LEAGYSVLGWNHPGFAGSTGVPFPQNEANAMDVVVQFAIHRLGFQPQDIIIYAWSIGGFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LEAGYSVLGWNHPGFAGSTGVPFPQNEANAMDVVVQFAIHRLGFQPQDIIIYAWSIGGFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 ATWAAMSYPDVSAMILDASFDDLVPLALKVMPDSWRGLVTRTVRQHLNLNNAEQLCRYQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 ATWAAMSYPDVSAMILDASFDDLVPLALKVMPDSWRGLVTRTVRQHLNLNNAEQLCRYQG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 PVLLIRRTKDEIITTTVPEDIMSNRGNDLLLKLLQHRYPRVMAEEGLRVVRQWLEASSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 PVLLIRRTKDEIITTTVPEDIMSNRGNDLLLKLLQHRYPRVMAEEGLRVVRQWLEASSQL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 EEASIYSRWEVEEDWCLSVLRSYQAEHGPDFPWSVGEDMSADGRRQLALFLARKHLHNFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 EEASIYSRWEVEEDWCLSVLRSYQAEHGPDFPWSVGEDMSADGRRQLALFLARKHLHNFE
              490       500       510       520       530       540

              550        
pF1KE1 ATHCTPLPAQNFQMPWHL
       ::::::::::::::::::
NP_066 ATHCTPLPAQNFQMPWHL
              550        

>>NP_001170986 (OMIM: 142620) protein ABHD16A isoform b   (525 aa)
 initn: 3250 init1: 3250 opt: 3250  Z-score: 4071.3  bits: 763.1 E(85289):    0
Smith-Waterman score: 3250; 100.0% identity (100.0% similar) in 473 aa overlap (86-558:53-525)

          60        70        80        90       100       110     
pF1KE1 HADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRG
                                     ::::::::::::::::::::::::::::::
NP_001 RSCIRRSSPQPPPNLAWRPESLYSGELAGGGYLSLSKVVPFSHYAGTLLLLLAGVACLRG
             30        40        50        60        70        80  

         120       130       140       150       160       170     
pF1KE1 IGRWTNPQYRQFITILEATHRNQSSENKRQLANYNFDFRSWPVDFHWEEPSSRKESRGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGRWTNPQYRQFITILEATHRNQSSENKRQLANYNFDFRSWPVDFHWEEPSSRKESRGGP
             90       100       110       120       130       140  

         180       190       200       210       220       230     
pF1KE1 SRRGVALLRPEPLHRGTADTLLNRVKKLPCQITSYLVAHTLGRRMLYPGSVYLLQKALMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRRGVALLRPEPLHRGTADTLLNRVKKLPCQITSYLVAHTLGRRMLYPGSVYLLQKALMP
            150       160       170       180       190       200  

         240       250       260       270       280       290     
pF1KE1 VLLQGQARLVEECNGRRAKLLACDGNEIDTMFVDRRGTAEPQGQKLVICCEGNAGFYEVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLLQGQARLVEECNGRRAKLLACDGNEIDTMFVDRRGTAEPQGQKLVICCEGNAGFYEVG
            210       220       230       240       250       260  

         300       310       320       330       340       350     
pF1KE1 CVSTPLEAGYSVLGWNHPGFAGSTGVPFPQNEANAMDVVVQFAIHRLGFQPQDIIIYAWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVSTPLEAGYSVLGWNHPGFAGSTGVPFPQNEANAMDVVVQFAIHRLGFQPQDIIIYAWS
            270       280       290       300       310       320  

         360       370       380       390       400       410     
pF1KE1 IGGFTATWAAMSYPDVSAMILDASFDDLVPLALKVMPDSWRGLVTRTVRQHLNLNNAEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGGFTATWAAMSYPDVSAMILDASFDDLVPLALKVMPDSWRGLVTRTVRQHLNLNNAEQL
            330       340       350       360       370       380  

         420       430       440       450       460       470     
pF1KE1 CRYQGPVLLIRRTKDEIITTTVPEDIMSNRGNDLLLKLLQHRYPRVMAEEGLRVVRQWLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRYQGPVLLIRRTKDEIITTTVPEDIMSNRGNDLLLKLLQHRYPRVMAEEGLRVVRQWLE
            390       400       410       420       430       440  

         480       490       500       510       520       530     
pF1KE1 ASSQLEEASIYSRWEVEEDWCLSVLRSYQAEHGPDFPWSVGEDMSADGRRQLALFLARKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASSQLEEASIYSRWEVEEDWCLSVLRSYQAEHGPDFPWSVGEDMSADGRRQLALFLARKH
            450       460       470       480       490       500  

         540       550        
pF1KE1 LHNFEATHCTPLPAQNFQMPWHL
       :::::::::::::::::::::::
NP_001 LHNFEATHCTPLPAQNFQMPWHL
            510       520     




558 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:40:43 2016 done: Sat Nov  5 07:40:44 2016
 Total Scan time: 10.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]