Result of FASTA (omim) for
pF1KE1016
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1016, 440 aa
1>>>pF1KE1016 440 - 440 aa - 440 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2227+/-0.000296; mu= 5.4705+/- 0.019
mean_var=179.2106+/-36.433, 0's: 0 Z-trim(123.3): 50 B-trim: 2088 in 1/55
Lambda= 0.095806
statistics sampled from 42886 (42940) to 42886 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.503), width: 16
Scan time: 9.410
The best scores are: opt bits E(85289)
NP_003891 (OMIM: 601530,602080,616437,617145) sequ ( 440) 3083 437.8 2.6e-122
NP_001135771 (OMIM: 601530,602080,616437,617145) s ( 356) 2520 360.0 5.9e-99
XP_016865499 (OMIM: 601530,602080,616437,617145) P ( 356) 2520 360.0 5.9e-99
NP_001135770 (OMIM: 601530,602080,616437,617145) s ( 356) 2520 360.0 5.9e-99
>>NP_003891 (OMIM: 601530,602080,616437,617145) sequesto (440 aa)
initn: 3083 init1: 3083 opt: 3083 Z-score: 2316.9 bits: 437.8 E(85289): 2.6e-122
Smith-Waterman score: 3083; 100.0% identity (100.0% similar) in 440 aa overlap (1-440:1-440)
10 20 30 40 50 60
pF1KE1 MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 MVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 HSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 GESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 EGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTK
370 380 390 400 410 420
430 440
pF1KE1 NYDIGAALDTIQYSKHPPPL
::::::::::::::::::::
NP_003 NYDIGAALDTIQYSKHPPPL
430 440
>>NP_001135771 (OMIM: 601530,602080,616437,617145) seque (356 aa)
initn: 2520 init1: 2520 opt: 2520 Z-score: 1897.6 bits: 360.0 E(85289): 5.9e-99
Smith-Waterman score: 2520; 100.0% identity (100.0% similar) in 356 aa overlap (85-440:1-356)
60 70 80 90 100 110
pF1KE1 FPALRPGGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCA
::::::::::::::::::::::::::::::
NP_001 MAMSYVKDDIFRIYIKEKKECRRDHRPPCA
10 20 30
120 130 140 150 160 170
pF1KE1 QEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGH
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE1 LSEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSV
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE1 NFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPS
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE1 KPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQ
220 230 240 250 260 270
360 370 380 390 400 410
pF1KE1 SLQMPESEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLQMPESEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLT
280 290 300 310 320 330
420 430 440
pF1KE1 RLLQTKNYDIGAALDTIQYSKHPPPL
::::::::::::::::::::::::::
NP_001 RLLQTKNYDIGAALDTIQYSKHPPPL
340 350
>>XP_016865499 (OMIM: 601530,602080,616437,617145) PREDI (356 aa)
initn: 2520 init1: 2520 opt: 2520 Z-score: 1897.6 bits: 360.0 E(85289): 5.9e-99
Smith-Waterman score: 2520; 100.0% identity (100.0% similar) in 356 aa overlap (85-440:1-356)
60 70 80 90 100 110
pF1KE1 FPALRPGGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCA
::::::::::::::::::::::::::::::
XP_016 MAMSYVKDDIFRIYIKEKKECRRDHRPPCA
10 20 30
120 130 140 150 160 170
pF1KE1 QEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGH
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE1 LSEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSV
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE1 NFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPS
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE1 KPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQ
220 230 240 250 260 270
360 370 380 390 400 410
pF1KE1 SLQMPESEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLQMPESEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLT
280 290 300 310 320 330
420 430 440
pF1KE1 RLLQTKNYDIGAALDTIQYSKHPPPL
::::::::::::::::::::::::::
XP_016 RLLQTKNYDIGAALDTIQYSKHPPPL
340 350
>>NP_001135770 (OMIM: 601530,602080,616437,617145) seque (356 aa)
initn: 2520 init1: 2520 opt: 2520 Z-score: 1897.6 bits: 360.0 E(85289): 5.9e-99
Smith-Waterman score: 2520; 100.0% identity (100.0% similar) in 356 aa overlap (85-440:1-356)
60 70 80 90 100 110
pF1KE1 FPALRPGGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCA
::::::::::::::::::::::::::::::
NP_001 MAMSYVKDDIFRIYIKEKKECRRDHRPPCA
10 20 30
120 130 140 150 160 170
pF1KE1 QEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGH
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE1 LSEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSV
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE1 NFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPS
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE1 KPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQ
220 230 240 250 260 270
360 370 380 390 400 410
pF1KE1 SLQMPESEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLQMPESEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLT
280 290 300 310 320 330
420 430 440
pF1KE1 RLLQTKNYDIGAALDTIQYSKHPPPL
::::::::::::::::::::::::::
NP_001 RLLQTKNYDIGAALDTIQYSKHPPPL
340 350
440 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:26:01 2016 done: Sat Nov 5 13:26:03 2016
Total Scan time: 9.410 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]