FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1016, 440 aa
  1>>>pF1KE1016 440 - 440 aa - 440 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8857+/-0.000713; mu= 7.7383+/- 0.043
 mean_var=165.8263+/-33.459, 0's: 0 Z-trim(115.8): 17  B-trim: 0 in 0/53
 Lambda= 0.099597
 statistics sampled from 16331 (16346) to 16331 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.502), width:  16
 Scan time:  3.610

The best scores are:                                      opt bits E(32554)
CCDS34317.1 SQSTM1 gene_id:8878|Hs108|chr5         ( 440) 3083 454.4  1e-127
CCDS47355.1 SQSTM1 gene_id:8878|Hs108|chr5         ( 356) 2520 373.4  2e-103


>>CCDS34317.1 SQSTM1 gene_id:8878|Hs108|chr5              (440 aa)
 initn: 3083 init1: 3083 opt: 3083  Z-score: 2406.2  bits: 454.4 E(32554): 1e-127
Smith-Waterman score: 3083; 100.0% identity (100.0% similar) in 440 aa overlap (1-440:1-440)

               10        20        30        40        50        60
pF1KE1 MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 MVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 HSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 GESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 SEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTK
              370       380       390       400       410       420

              430       440
pF1KE1 NYDIGAALDTIQYSKHPPPL
       ::::::::::::::::::::
CCDS34 NYDIGAALDTIQYSKHPPPL
              430       440

>>CCDS47355.1 SQSTM1 gene_id:8878|Hs108|chr5              (356 aa)
 initn: 2520 init1: 2520 opt: 2520  Z-score: 1970.3  bits: 373.4 E(32554): 2e-103
Smith-Waterman score: 2520; 100.0% identity (100.0% similar) in 356 aa overlap (85-440:1-356)

           60        70        80        90       100       110    
pF1KE1 FPALRPGGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCA
                                     ::::::::::::::::::::::::::::::
CCDS47                               MAMSYVKDDIFRIYIKEKKECRRDHRPPCA
                                             10        20        30

          120       130       140       150       160       170    
pF1KE1 QEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGH
               40        50        60        70        80        90

          180       190       200       210       220       230    
pF1KE1 LSEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LSEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSV
              100       110       120       130       140       150

          240       250       260       270       280       290    
pF1KE1 NFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPS
              160       170       180       190       200       210

          300       310       320       330       340       350    
pF1KE1 KPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQ
              220       230       240       250       260       270

          360       370       380       390       400       410    
pF1KE1 SLQMPESEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SLQMPESEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLT
              280       290       300       310       320       330

          420       430       440
pF1KE1 RLLQTKNYDIGAALDTIQYSKHPPPL
       ::::::::::::::::::::::::::
CCDS47 RLLQTKNYDIGAALDTIQYSKHPPPL
              340       350      




440 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:26:01 2016 done: Sat Nov  5 13:26:01 2016
 Total Scan time:  3.610 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]