FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1011, 228 aa
  1>>>pF1KE1011 228 - 228 aa - 228 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6632+/-0.00077; mu= 0.0750+/- 0.047
 mean_var=180.0174+/-35.726, 0's: 0 Z-trim(115.1): 11  B-trim: 66 in 1/55
 Lambda= 0.095591
 statistics sampled from 15673 (15681) to 15673 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.482), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS31775.1 YAF2 gene_id:10138|Hs108|chr12         ( 180)  528 83.8 7.9e-17


>>CCDS31775.1 YAF2 gene_id:10138|Hs108|chr12              (180 aa)
 initn: 809 init1: 499 opt: 528  Z-score: 415.6  bits: 83.8 E(32554): 7.9e-17
Smith-Waterman score: 737; 56.4% identity (72.9% similar) in 225 aa overlap (3-227:1-179)

               10        20        30        40        50        60
pF1KE1 MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQ
         ::::::::::::: ::..:::.::::::::::::::::: .:::::::::::::  ::
CCDS31   MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQ
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE1 LVAQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKD
       ::::::.::.. :   :::::.:::   ::: ::.     ...:::..:::         
CCDS31 LVAQQVTQQFVPPTQSKKEKKDKVE---KEKSEKE-----TTSKKNSHKKT---------
       60        70        80           90            100          

              130       140       150       160       170       180
pF1KE1 PPSEANSIQSANATTKTSETNHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSS
                               ::::::::::.::.: ::::..:::::::::::.: 
CCDS31 ------------------------RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSP
                                     110       120       130       

              190       200       210       220        
pF1KE1 STSSSTVTSSAGSEQQNQSSSGSESTDKGSSRSSTPKGDMSAVNDESF
        .::.     :...:..::.:.:..:..: ::::.:.:. :..: :: 
CCDS31 PASSA-----ASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
       140            150       160       170       180




228 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:11:40 2016 done: Sat Nov  5 21:11:41 2016
 Total Scan time:  2.560 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]