FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1010, 224 aa
  1>>>pF1KE1010 224 - 224 aa - 224 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2962+/-0.00081; mu= 2.5590+/- 0.049
 mean_var=257.5416+/-50.383, 0's: 0 Z-trim(117.0): 16  B-trim: 127 in 1/52
 Lambda= 0.079919
 statistics sampled from 17706 (17722) to 17706 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.544), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS35335.2 CHIC1 gene_id:53344|Hs108|chrX         ( 224) 1524 187.6 5.6e-48
CCDS75993.1 CHIC1 gene_id:53344|Hs108|chrX         ( 204) 1279 159.3 1.7e-39
CCDS3493.1 CHIC2 gene_id:26511|Hs108|chr4          ( 165)  941 120.2 7.9e-28


>>CCDS35335.2 CHIC1 gene_id:53344|Hs108|chrX              (224 aa)
 initn: 1524 init1: 1524 opt: 1524  Z-score: 974.8  bits: 187.6 E(32554): 5.6e-48
Smith-Waterman score: 1524; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KE1 MSILLPNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSILLPNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EEEEEEEEAPPPPRVVSEEHLRRYAPDPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EEEEEEEEAPPPPRVVSEEHLRRYAPDPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EEFKTSIGRVNACLKKALPVNVKWLLCGCLCCCCTLGCSLWPVICLNKRTRRSIQKLIEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EEFKTSIGRVNACLKKALPVNVKWLLCGCLCCCCTLGCSLWPVICLNKRTRRSIQKLIEW
              130       140       150       160       170       180

              190       200       210       220    
pF1KE1 ENNRLYHKLALHWKLTKRKCETSNMMEYVILIEFLPKYPIFRPD
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ENNRLYHKLALHWKLTKRKCETSNMMEYVILIEFLPKYPIFRPD
              190       200       210       220    

>>CCDS75993.1 CHIC1 gene_id:53344|Hs108|chrX              (204 aa)
 initn: 1772 init1: 1279 opt: 1279  Z-score: 822.6  bits: 159.3 E(32554): 1.7e-39
Smith-Waterman score: 1335; 91.1% identity (91.1% similar) in 224 aa overlap (1-224:1-204)

               10        20        30        40        50        60
pF1KE1 MSILLPNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MSILLPNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EEEEEEEEAPPPPRVVSEEHLRRYAPDPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EEEEEEEEAPPPPRVVSEEHLRRYAPDPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EEFKTSIGRVNACLKKALPVNVKWLLCGCLCCCCTLGCSLWPVICLNKRTRRSIQKLIEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EEFKTSIGRVNACLKKALPVNVKWLLCGCLCCCCTLGCSLWPVICLNKRTRRSIQKLIEW
              130       140       150       160       170       180

              190       200       210       220    
pF1KE1 ENNRLYHKLALHWKLTKRKCETSNMMEYVILIEFLPKYPIFRPD
       ::::::::                    ::::::::::::::::
CCDS75 ENNRLYHK--------------------VILIEFLPKYPIFRPD
                                  190       200    

>>CCDS3493.1 CHIC2 gene_id:26511|Hs108|chr4               (165 aa)
 initn: 970 init1: 923 opt: 941  Z-score: 613.1  bits: 120.2 E(32554): 7.9e-28
Smith-Waterman score: 941; 78.0% identity (91.1% similar) in 168 aa overlap (57-224:5-165)

         30        40        50        60        70        80      
pF1KE1 TSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEEEEEEEEEAPPPPRVVSEEHLRRYAP
                                     .:  ::::.::.:        ::.: .:.:
CCDS34                           MADFDEIYEEEEDEERA-------LEEQLLKYSP
                                         10               20       

         90       100       110       120       130       140      
pF1KE1 DPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNACLKKALPVNVKWLL
       :::.:::.::.:::::::::..:::: :::::::::::.::.:::.:::: :::::.:::
CCDS34 DPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLL
        30        40        50        60        70        80       

        150       160       170       180       190       200      
pF1KE1 CGCLCCCCTLGCSLWPVICLNKRTRRSIQKLIEWENNRLYHKLALHWKLTKRKCETSNMM
       :::::::::::::.::::::.:::::::.::.::::::::::: :::.:.::::::.:::
CCDS34 CGCLCCCCTLGCSMWPVICLSKRTRRSIEKLLEWENNRLYHKLCLHWRLSKRKCETNNMM
        90       100       110       120       130       140       

        210       220    
pF1KE1 EYVILIEFLPKYPIFRPD
       ::::::::::: ::::::
CCDS34 EYVILIEFLPKTPIFRPD
       150       160     




224 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:23:22 2016 done: Sat Nov  5 13:23:23 2016
 Total Scan time:  2.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]