FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1007, 196 aa
  1>>>pF1KE1007 196 - 196 aa - 196 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5695+/-0.000998; mu= 8.3175+/- 0.060
 mean_var=97.1164+/-19.151, 0's: 0 Z-trim(105.9): 20  B-trim: 0 in 0/52
 Lambda= 0.130145
 statistics sampled from 8677 (8685) to 8677 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.267), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS45552.1 CHMP1A gene_id:5119|Hs108|chr16        ( 196) 1196 234.5 3.3e-62
CCDS54180.1 CHMP1B gene_id:57132|Hs108|chr18       ( 199)  682 138.0 3.8e-33


>>CCDS45552.1 CHMP1A gene_id:5119|Hs108|chr16             (196 aa)
 initn: 1196 init1: 1196 opt: 1196  Z-score: 1230.3  bits: 234.5 E(32554): 3.3e-62
Smith-Waterman score: 1196; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV
              130       140       150       160       170       180

              190      
pF1KE1 RSQEDQLSRRLAALRN
       ::::::::::::::::
CCDS45 RSQEDQLSRRLAALRN
              190      

>>CCDS54180.1 CHMP1B gene_id:57132|Hs108|chr18            (199 aa)
 initn: 723 init1: 609 opt: 682  Z-score: 708.6  bits: 138.0 E(32554): 3.8e-33
Smith-Waterman score: 682; 55.8% identity (85.3% similar) in 197 aa overlap (1-196:4-197)

                  10        20        30        40        50       
pF1KE1    MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKN
          :.  ::.:::.::.: . ::: .:. :::.::.:::. . :.: ::..::::::.::
CCDS54 MSNMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKN
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE1 EGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQ
       ..::.:::..::::::..:::::::  :::.:: :.:..: .:.::.:.:.:..::.::.
CCDS54 QAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEH
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KE1 QVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGAS-AVG
       : ..:::.:. :::.:::.:::::::.::: :....:.: ::   :   .::.: . .::
CCDS54 QFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL---DLNMELPQGQTGSVG
              130       140       150       160          170       

        180       190        
pF1KE1 ESSVRSQEDQLSRRLAALRN  
        : . ...:.::.::: ::.  
CCDS54 TSVASAEQDELSQRLARLRDQV
       180       190         




196 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:22:52 2016 done: Sat Nov  5 13:22:52 2016
 Total Scan time:  1.970 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]