FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1006, 187 aa
  1>>>pF1KE1006 187 - 187 aa - 187 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0281+/-0.000294; mu= 14.4555+/- 0.018
 mean_var=63.8296+/-12.952, 0's: 0 Z-trim(117.4): 22  B-trim: 0 in 0/52
 Lambda= 0.160533
 statistics sampled from 29269 (29291) to 29269 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.343), width:  16
 Scan time:  5.990

The best scores are:                                      opt bits E(85289)
NP_002558 (OMIM: 604591) phosphatidylethanolamine- ( 187) 1303 309.8 1.6e-84
NP_115867 (OMIM: 611844) 39S ribosomal protein L38 ( 380)  276 72.1 1.2e-12
XP_011542716 (OMIM: 612473) PREDICTED: phosphatidy ( 227)  273 71.3 1.2e-12
NP_659399 (OMIM: 612473) phosphatidylethanolamine- ( 227)  273 71.3 1.2e-12


>>NP_002558 (OMIM: 604591) phosphatidylethanolamine-bind  (187 aa)
 initn: 1303 init1: 1303 opt: 1303  Z-score: 1638.2  bits: 309.8 E(85289): 1.6e-84
Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)

               10        20        30        40        50        60
pF1KE1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL
              130       140       150       160       170       180

              
pF1KE1 YEQLSGK
       :::::::
NP_002 YEQLSGK
              

>>NP_115867 (OMIM: 611844) 39S ribosomal protein L38, mi  (380 aa)
 initn: 215 init1: 149 opt: 276  Z-score: 348.3  bits: 72.1 E(85289): 1.2e-12
Smith-Waterman score: 276; 31.2% identity (64.1% similar) in 170 aa overlap (21-184:169-334)

                         10        20        30            40      
pF1KE1           MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDEL----GKVLTPTQV
                                     :. ::::.:: .  : .    :. .:::..
NP_115 WERTCGPYHKQRLAEYYGLYRDLFHGATFVPRVPLHVAYAVGEDDLMPVYCGNEVTPTEA
      140       150       160       170       180       190        

         50        60        70        80        90       100      
pF1KE1 KNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDY
        . :  ..... . :.:.::.::. :.    .:   :. :.:..:. :: .. : :   :
NP_115 AQAPE-VTYEA-EEGSLWTLLLTSLDG-HLLEPDA-EYLHWLLTNIPGNRVAEGQVTCPY
      200         210       220        230        240       250    

        110       120       130       140        150        160    
pF1KE1 VGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGK-FKVASFRKKY-ELRAPV
       .   : .:.:.:: ..:...::.:.  .:    .   .   . :.. .: ::. :  .:.
NP_115 LPPFPARGSGIHRLAFLLFKQDQPIDFSEDARPSPCYQLAQRTFRTFDFYKKHQETMTPA
          260       270       280       290       300       310    

          170       180                                            
pF1KE1 AGTCYQAEWDDYVPKLYEQLSGK                                     
       . . .: .::: :  ...::                                        
NP_115 GLSFFQCRWDDSVTYIFHQLLDMREPVFEFVRPPPYHPKQKRFPHRQPLRYLDRYRDSHE
          320       330       340       350       360       370    

>>XP_011542716 (OMIM: 612473) PREDICTED: phosphatidyleth  (227 aa)
 initn: 239 init1: 170 opt: 273  Z-score: 347.8  bits: 71.3 E(85289): 1.2e-12
Smith-Waterman score: 274; 32.7% identity (59.1% similar) in 159 aa overlap (36-180:52-206)

          10        20        30        40           50            
pF1KE1 SKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKV---LTPTQVKNRPTSISW-------
                                     :::..   ..:   . :    ::       
XP_011 GDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKVVPDCNNYRQKITSWMEPIVKF
              30        40        50        60        70        80 

          60        70        80        90       100           110 
pF1KE1 DGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTV----LSDYVGSGP
        :  .:  : ::..::::::: .:. : :.:.::...:: :...: .    :: : . .:
XP_011 PGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKGADLKKGKIQGQELSAYQAPSP
              90       100       110       120       130       140 

             120       130       140       150       160       170 
pF1KE1 PKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQA
       :  .:.::: ..:: :.  .    :    . .  ::..:.  : ....:  : :.: ...
XP_011 PAHSGFHRYQFFVYLQEGKVISLLP----KENKTRGSWKMDRFLNRFHLGEPEASTQFMT
             150       160           170       180       190       

             180                     
pF1KE1 EWDDYVPKLYEQLSGK              
       .  .  : :                     
XP_011 QNYQDSPTLQAPRERASEPKHKNQAEIAAC
       200       210       220       

>>NP_659399 (OMIM: 612473) phosphatidylethanolamine-bind  (227 aa)
 initn: 239 init1: 170 opt: 273  Z-score: 347.8  bits: 71.3 E(85289): 1.2e-12
Smith-Waterman score: 274; 32.7% identity (59.1% similar) in 159 aa overlap (36-180:52-206)

          10        20        30        40           50            
pF1KE1 SKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKV---LTPTQVKNRPTSISW-------
                                     :::..   ..:   . :    ::       
NP_659 GDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKVVPDCNNYRQKITSWMEPIVKF
              30        40        50        60        70        80 

          60        70        80        90       100           110 
pF1KE1 DGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTV----LSDYVGSGP
        :  .:  : ::..::::::: .:. : :.:.::...:: :...: .    :: : . .:
NP_659 PGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKGADLKKGKIQGQELSAYQAPSP
              90       100       110       120       130       140 

             120       130       140       150       160       170 
pF1KE1 PKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQA
       :  .:.::: ..:: :.  .    :    . .  ::..:.  : ....:  : :.: ...
NP_659 PAHSGFHRYQFFVYLQEGKVISLLP----KENKTRGSWKMDRFLNRFHLGEPEASTQFMT
             150       160           170       180       190       

             180                     
pF1KE1 EWDDYVPKLYEQLSGK              
       .  .  : :                     
NP_659 QNYQDSPTLQAPRERASEPKHKNQAEIAAC
       200       210       220       




187 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:22:24 2016 done: Sat Nov  5 13:22:25 2016
 Total Scan time:  5.990 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]