Result of FASTA (ccds) for
pF1KE1003
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1003, 153 aa
1>>>pF1KE1003 153 - 153 aa - 153 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9771+/-0.000848; mu= 12.8920+/- 0.051
mean_var=59.5055+/-12.279, 0's: 0 Z-trim(106.0): 25 B-trim: 2 in 1/47
Lambda= 0.166263
statistics sampled from 8711 (8728) to 8711 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.268), width: 16
Scan time: 1.730
The best scores are: opt bits E(32554)
CCDS2006.1 MAL gene_id:4118|Hs108|chr2 ( 153) 1001 248.3 1.4e-66
CCDS2007.1 MAL gene_id:4118|Hs108|chr2 ( 111) 591 149.8 4.4e-37
CCDS2008.1 MAL gene_id:4118|Hs108|chr2 ( 97) 421 109.0 7.3e-25
CCDS2085.1 MALL gene_id:7851|Hs108|chr2 ( 153) 396 103.1 6.8e-23
CCDS75780.1 MAL2 gene_id:114569|Hs108|chr8 ( 176) 293 78.5 2.1e-15
CCDS2652.1 CMTM8 gene_id:152189|Hs108|chr3 ( 173) 250 68.1 2.6e-12
>>CCDS2006.1 MAL gene_id:4118|Hs108|chr2 (153 aa)
initn: 1001 init1: 1001 opt: 1001 Z-score: 1308.7 bits: 248.3 E(32554): 1.4e-66
Smith-Waterman score: 1001; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVPWPLVQGWVMFVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVPWPLVQGWVMFVSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FCFVATTTLIILYIIGAHGGETSWVTLDAAYHCTAALFYLSASVLEALATITMQDGFTYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 FCFVATTTLIILYIIGAHGGETSWVTLDAAYHCTAALFYLSASVLEALATITMQDGFTYR
70 80 90 100 110 120
130 140 150
pF1KE1 HYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
:::::::::::::::::::::::::::::::::
CCDS20 HYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
130 140 150
>>CCDS2007.1 MAL gene_id:4118|Hs108|chr2 (111 aa)
initn: 581 init1: 581 opt: 591 Z-score: 779.3 bits: 149.8 E(32554): 4.4e-37
Smith-Waterman score: 637; 72.5% identity (72.5% similar) in 153 aa overlap (1-153:1-111)
10 20 30 40 50 60
pF1KE1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVPWPLVQGWVMFVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVPWPLVQGWVMFVSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FCFVATTTLIILYIIGAHGGETSWVTLDAAYHCTAALFYLSASVLEALATITMQDGFTYR
:::::::::::::::::::::::::::
CCDS20 FCFVATTTLIILYIIGAHGGETSWVTL---------------------------------
70 80
130 140 150
pF1KE1 HYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
::::::::::::::::::::::::
CCDS20 ---------VFSYIATLLYVVHAVFSLIRWKSS
90 100 110
>>CCDS2008.1 MAL gene_id:4118|Hs108|chr2 (97 aa)
initn: 421 init1: 421 opt: 421 Z-score: 559.8 bits: 109.0 E(32554): 7.3e-25
Smith-Waterman score: 498; 63.4% identity (63.4% similar) in 153 aa overlap (1-153:1-97)
10 20 30 40 50 60
pF1KE1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVPWPLVQGWVMFVSV
:::::::::::::::::::::::::::::::
CCDS20 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEF-----------------------------
10 20 30
70 80 90 100 110 120
pF1KE1 FCFVATTTLIILYIIGAHGGETSWVTLDAAYHCTAALFYLSASVLEALATITMQDGFTYR
:::::::::::::::::::::::::::::::::
CCDS20 ---------------------------DAAYHCTAALFYLSASVLEALATITMQDGFTYR
40 50 60
130 140 150
pF1KE1 HYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
:::::::::::::::::::::::::::::::::
CCDS20 HYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
70 80 90
>>CCDS2085.1 MALL gene_id:7851|Hs108|chr2 (153 aa)
initn: 393 init1: 393 opt: 396 Z-score: 524.4 bits: 103.1 E(32554): 6.8e-23
Smith-Waterman score: 396; 42.8% identity (73.8% similar) in 145 aa overlap (3-147:7-150)
10 20 30 40 50
pF1KE1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVPWPLVQGWVM
::.. . : .::: ..: :.: .:. :.::: ::: .::.. . .::.:::::
CCDS20 MASPDPPATSYAPSDVPSGVALFLTIPFAFFLPELIFGFLVWTMVAATHIVYPLLQGWVM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 FVSVFCFVATTTLIILYIIGAHGGETSWVTLDAAYHCTAALFYLSASVLEALATITMQDG
.::. :. . ... :..: . :: .::. :: :....:.::.::.. :::. .
CCDS20 YVSLTSFLISLMFLLSYLFGFYKRFESWRVLDSLYHGTTGILYMSAAVLQVHATIVSEKL
70 80 90 100 110 120
120 130 140 150
pF1KE1 FTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
. : :. : :: :..::::::..:: ::.
CCDS20 LDPRIYYINSAASFFAFIATLLYILHA-FSIYYH
130 140 150
>>CCDS75780.1 MAL2 gene_id:114569|Hs108|chr8 (176 aa)
initn: 342 init1: 210 opt: 293 Z-score: 390.0 bits: 78.5 E(32554): 2.1e-15
Smith-Waterman score: 338; 40.1% identity (64.5% similar) in 152 aa overlap (11-151:24-175)
10 20 30 40
pF1KE1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVP
:::.: ... : . .:..:::::::::::: ::
CCDS75 MSAGGASVPPPPNPAVSFPPPRVTLPAGPDILRTYSGAFVCLEILFGGLVWILVASSNVP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 WPLVQGWVMFVSVFCFVATTTLIILYIIGAHGG-ETSWVTLDAAYHCTAALFYLSASVLE
::.::::::::: : . .. ... : . ...: :: ::: :. .::..: .::
CCDS75 LPLLQGWVMFVSVTAFFFSLLFLGMFLSGMVAQIDANWNFLDFAYHFTVFVFYFGAFLLE
70 80 90 100 110 120
110 120 130 140 150
pF1KE1 ALAT----------ITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
: :: :: : .. .:. :.:: .:....: : ..: ::.
CCDS75 AAATSLHDLHCNTTITGQPLLSDNQYNINVAASIFAFMTTACYGCSLGLALRRWRP
130 140 150 160 170
>>CCDS2652.1 CMTM8 gene_id:152189|Hs108|chr3 (173 aa)
initn: 184 init1: 148 opt: 250 Z-score: 334.4 bits: 68.1 E(32554): 2.6e-12
Smith-Waterman score: 250; 30.2% identity (66.4% similar) in 149 aa overlap (6-152:24-169)
10 20 30 40
pF1KE1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVA
.:..:.. . ::: .:.. :...: ::: :.:
CCDS26 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLPGFLIVAEIVLGLLVWTLIA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 SSLVPWPLVQGWVMFVSVFCFVATTTLIILYIIGAHG--GETSWVTLDAAYHCTAALFYL
.. . ::::::.:: .: :. ..:.:: .. .. :.:. .. .: ..::
CCDS26 GTEYFRVPAFGWVMFVAVFYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL
70 80 90 100 110 120
110 120 130 140 150
pF1KE1 SASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
::.:..: .. .:. .. . :. :....:. :. .. ::.: :.:
CCDS26 SAAVVDASSVSPERDSHNFNSW---AASSFFAFLVTICYAGNTYFSFIAWRSRTIQ
130 140 150 160 170
153 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:20:55 2016 done: Sat Nov 5 13:20:56 2016
Total Scan time: 1.730 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]