FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1001, 133 aa
  1>>>pF1KE1001 133 - 133 aa - 133 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3089+/-0.000326; mu= 7.3237+/- 0.020
 mean_var=95.6580+/-17.976, 0's: 0 Z-trim(117.8): 10  B-trim: 48 in 1/53
 Lambda= 0.131133
 statistics sampled from 30119 (30122) to 30119 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.353), width:  16
 Scan time:  4.560

The best scores are:                                      opt bits E(85289)
NP_110442 (OMIM: 610789) p53 and DNA damage-regula ( 133)  852 170.4 7.6e-43


>>NP_110442 (OMIM: 610789) p53 and DNA damage-regulated   (133 aa)
 initn: 852 init1: 852 opt: 852  Z-score: 890.2  bits: 170.4 E(85289): 7.6e-43
Smith-Waterman score: 852; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE1 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 FGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLN
               70        80        90       100       110       120

              130   
pF1KE1 QDELKALKVILKG
       :::::::::::::
NP_110 QDELKALKVILKG
              130   




133 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:19:31 2016 done: Sat Nov  5 13:19:31 2016
 Total Scan time:  4.560 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]