FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1001, 133 aa
  1>>>pF1KE1001 133 - 133 aa - 133 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9295+/-0.000786; mu= 9.3722+/- 0.048
 mean_var=91.1953+/-17.715, 0's: 0 Z-trim(110.3): 12  B-trim: 71 in 1/51
 Lambda= 0.134304
 statistics sampled from 11528 (11532) to 11528 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.354), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(32554)
CCDS13194.1 PDRG1 gene_id:81572|Hs108|chr20        ( 133)  852 174.1 2.3e-44


>>CCDS13194.1 PDRG1 gene_id:81572|Hs108|chr20             (133 aa)
 initn: 852 init1: 852 opt: 852  Z-score: 910.1  bits: 174.1 E(32554): 2.3e-44
Smith-Waterman score: 852; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE1 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLN
               70        80        90       100       110       120

              130   
pF1KE1 QDELKALKVILKG
       :::::::::::::
CCDS13 QDELKALKVILKG
              130   




133 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:19:30 2016 done: Sat Nov  5 13:19:30 2016
 Total Scan time:  1.750 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]