Result of FASTA (ccds) for
pF1KE0959
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0959, 499 aa
1>>>pF1KE0959 499 - 499 aa - 499 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.0886+/-0.000916; mu= 2.9002+/- 0.055
mean_var=315.3713+/-68.593, 0's: 0 Z-trim(116.2): 451 B-trim: 481 in 1/53
Lambda= 0.072221
statistics sampled from 16237 (16781) to 16237 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.515), width: 16
Scan time: 3.920
The best scores are: opt bits E(32554)
CCDS10486.1 PKMYT1 gene_id:9088|Hs108|chr16 ( 499) 3504 378.6 8.6e-105
CCDS58414.1 PKMYT1 gene_id:9088|Hs108|chr16 ( 490) 3444 372.4 6.4e-103
CCDS45391.1 PKMYT1 gene_id:9088|Hs108|chr16 ( 480) 3107 337.2 2.4e-92
CCDS58415.1 PKMYT1 gene_id:9088|Hs108|chr16 ( 430) 2974 323.3 3.3e-88
>>CCDS10486.1 PKMYT1 gene_id:9088|Hs108|chr16 (499 aa)
initn: 3504 init1: 3504 opt: 3504 Z-score: 1994.9 bits: 378.6 E(32554): 8.6e-105
Smith-Waterman score: 3504; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:1-499)
10 20 30 40 50 60
pF1KE0 MLERPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLERPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 LLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSF
430 440 450 460 470 480
490
pF1KE0 PSFEPRNLLSLFEDTLDPT
:::::::::::::::::::
CCDS10 PSFEPRNLLSLFEDTLDPT
490
>>CCDS58414.1 PKMYT1 gene_id:9088|Hs108|chr16 (490 aa)
initn: 3444 init1: 3444 opt: 3444 Z-score: 1961.2 bits: 372.4 E(32554): 6.4e-103
Smith-Waterman score: 3444; 100.0% identity (100.0% similar) in 490 aa overlap (10-499:1-490)
10 20 30 40 50 60
pF1KE0 MLERPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE0 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE0 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE0 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE0 LLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSF
420 430 440 450 460 470
490
pF1KE0 PSFEPRNLLSLFEDTLDPT
:::::::::::::::::::
CCDS58 PSFEPRNLLSLFEDTLDPT
480 490
>>CCDS45391.1 PKMYT1 gene_id:9088|Hs108|chr16 (480 aa)
initn: 3164 init1: 3107 opt: 3107 Z-score: 1771.5 bits: 337.2 E(32554): 2.4e-92
Smith-Waterman score: 3107; 99.3% identity (99.5% similar) in 442 aa overlap (1-442:1-442)
10 20 30 40 50 60
pF1KE0 MLERPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MLERPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 LLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSF
::::::::::::::::::. :
CCDS45 LLLDSSLSSNWDDDSLGPGHPPCLACPPAGLHSPLRLSWPGLWGAPPPPGAGAHPGMPWT
430 440 450 460 470 480
>>CCDS58415.1 PKMYT1 gene_id:9088|Hs108|chr16 (430 aa)
initn: 2974 init1: 2974 opt: 2974 Z-score: 1697.2 bits: 323.3 E(32554): 3.3e-88
Smith-Waterman score: 2974; 100.0% identity (100.0% similar) in 426 aa overlap (74-499:5-430)
50 60 70 80 90 100
pF1KE0 PRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPE
::::::::::::::::::::::::::::::
CCDS58 MLERWHQLQPRRVSFRGEASETLQSPGYDPSRPE
10 20 30
110 120 130 140 150 160
pF1KE0 SFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEK
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 VGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAH
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE0 LHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSY
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE0 GTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPD
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE0 PKLRATAEALLALPVLRQPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PKLRATAEALLALPVLRQPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASW
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE0 LQPLGPPATPPGSPPCSLLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LQPLGPPATPPGSPPCSLLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPR
340 350 360 370 380 390
470 480 490
pF1KE0 DALDLSDINSEPPRGSFPSFEPRNLLSLFEDTLDPT
::::::::::::::::::::::::::::::::::::
CCDS58 DALDLSDINSEPPRGSFPSFEPRNLLSLFEDTLDPT
400 410 420 430
499 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:43:10 2016 done: Sat Nov 5 04:43:10 2016
Total Scan time: 3.920 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]